Improving description of hydrogen bonds at the semiempirical level: water–water interactions as test case

Hydrogen bonding is not well described by available semiempirical theories. This is an important restriction because hydrogen bonds represent a key feature in many chemical and biochemical processes, besides being responsible for the singular properties of water. In this study, we describe a possible solution to this problem. The basic idea is to replace the nonphysical gaussian correction functions (GCF) appearing in the core–core repulsion terms of most MNDO‐based semiempirical methods by a simple function exhibiting the correct physical behavior in the whole range of intermolecular separation distances. The parameterized interaction function (PIF) is the sum of atom‐pair contributions, each one having five adjustable parameters. In this work, the approach is used to study water–water interactions. The parameters are optimized to reproduce a reference ab initio intermolecular energy surface for the water–water dimer obtained at the MP2/aug‐cc‐pVQZ level. OO, OH, and HH parameters are reported for the PM3 method. The results of PM3‐PIF calculations remarkably improve qualitatively and quantitatively those obtained at the standard PM3 level, both for water–dimer properties and for water clusters up to the hexamer. For example, the root‐mean‐square deviation of the PM3‐PIF interaction energies, with respect to ab initio values obtained using 700 points of the water dimer surface, is only 0.47 kcal/mol. This value is much smaller than that obtained using the standard PM3 method (4.2 kcal/mol). The PM3‐PIF water dimer energy minimum (−5.0 kcal/mol) is also much closer to ab initio data (−5.0±0.01 kcal/mol) than PM3 (−3.50 kcal/mol). The method is therefore promising for the development of new semiempirical approaches as well as for application of combined quantum mechanics and molecular mechanics techniques to investigate chemical processes in water. © 2000 John Wiley & Sons, Inc. J Comput Chem 21: 572–581, 2000     

Contribution of polymeric supports to the development of tissue engineering

Tissue Engineering is an emerging discipline based on the concept of the rational design and fabrication of living tissues and organs for repair and replacement. The present article deals with the criteria for the selection of polymeric supports necessary for the growing and multiplication of cells responsible of the regenerative tissue. Criteria of biocompatibility, biodegradability and non toxic character of the degradation products are considered and the chemical structure and physical‐chemical properties and morphology of natural and synthetic polymeric systems are described. The experimental “in vivo” study of the regeneration of sciatic nerve in rats with a guided experimental device is presented. The activation of regeneration by the sustained release of growth hormone from a slow soluble vinyl pyrrolidone‐hydroxyethyl methacrylate copolymer hydrogel is shown on the basis of histopathological analysis.     

Modelling of pipeline integrity taking into account the fluid–structure interaction

Two mechanical models have been presented in this paper for structural failure prediction of piping systems conveying liquids subjected to pressure transients. One model takes into account the axial fluid–structure interaction (FSI) phenomenon between fluid and pipe motion, whereas the other refers to an extension of the well-known waterhammer formulation. Both models are described by a system of non-linear hyperbolic equations which are solved by using a numerical procedure based upon the operator splitting technique and Glimm's scheme. To implement Glimm's method, it is presented the solution of a 4×4 Riemann problem with discontinuous coefficients. Numerical predictions of both models are presented and compared, so that the influence of the FSI term on the failure analysis is focused on. © 1998 John Wiley & Sons, Ltd.     

P2Y12 Purinergic Receptor and Brain Tumors: Implications on Glioma Microenvironment

Gliomas are the most common malignant brain tumors in adults, characterized by a high proliferation and invasion. The tumor microenvironment is rich in growth-promoting signals and immunomodulatory pathways, which increase the tumor’s aggressiveness. In response to hypoxia and glioma therapy, the amounts of adenosine triphosphate (ATP) and adenosine diphosphate (ADP) strongly increase in the extracellular space, and the purinergic signaling is triggered by nucleotides’ interaction in P2 receptors. Several cell types are present in the tumor microenvironment and can facilitate tumor growth. In fact, tumor cells can activate platelets by the ADP-P2Y₁₂ engagement, which plays an essential role in the cancer context, protecting tumors from the immune attack and providing molecules that contribute to the growth and maintenance of a rich environment to sustain the protumor cycle. Besides platelets, the P2Y₁₂ receptor is expressed by some tumors, such as renal carcinoma, colon carcinoma, and gliomas, being related to tumor progression. In this context, this review aims to depict the glioma microenvironment, focusing on the relationship between platelets and tumor malignancy.     

Near‐monodisperse α‐hydroxy and α,ω‐dihydroxy amine‐based polymers: Synthesis and characterization

α‐Hydroxy and α,ω‐dihydroxy polymers of 2‐(dimethylamino)ethyl methacrylate (DMAEMA) of various molecular weights were synthesized by group transfer polymerization (GTP) in tetrahydrofuran (THF), using 1‐methoxy‐1‐(trimethylsiloxy)‐2‐methyl propene (MTS) as the initiator and tetrabutylammonium bibenzoate (TBABB) as the catalyst. The hydroxyl groups were introduced by adding one 2‐(trimethylsiloxy) ethyl methacrylate (TMSEMA) unit at one or at both ends of the polymer chain. The ends were converted to 2‐hydroxyethyl methacrylate (HEMA) units after the polymerization by acid‐catalyzed hydrolysis. Gel permeation chromatography (GPC) in THF and proton nuclear magnetic resonance (¹H‐NMR) spectroscopy in CDCl₃ were used to determine the molecular weight and composition of the polymers. These mono‐ and difunctional methacrylate polymers can be covalently linked at the hydroxy termini to form star polymers and model networks, respectively. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 1597–1607, 1999     

Thermal stability of solid and aqueous solutions of humic acid

The effects of temperature on the stability of a soil humic acid were studied in the present work. Solid samples of Gohy-573 humic acid (HA) and dissolved ones in aqueous solution (pH 6.0, 0.1 mol L⁻¹ NaClO₄) were investigated in order to understand the impact of temperature on the chemical properties of the material. The methods applied to solid samples in the present investigation were thermogravimetric analysis (TGA), temperature-programmed desorption coupled with mass spectrometry (TPD-MS), and in situ diffuse reflectance infrared Fourier transformed spectroscopy (in situ DRIFTS). Humic acid samples were studied in the 25-800 °C range, with focus on thermal/chemical processes up to 250 °C. The reversibility of the changes observed was investigated by cyclic changes to specified temperature ranges (40-110 °C). All measurements were conducted under inert-gas atmosphere in order to avoid samples combustion at increased temperatures. Aqueous solutions were analyzed by UV-vis absorption spectroscopy after storage at temperatures up to 95 °C, and storage times up to 1 week. For temperatures below 100 °C experiments on solid and aqueous samples have shown results which were consistent to each other. The amount of water desorbed is temperature dependent and up to 70 °C this process was totally reversible. Above 70 °C an irreversible loss of water was also observed, which according to UV-vis spectroscopy corresponds to water produced by condensation leading to more condensed polyaromatic structures. The water released up to 110 °C was about 7 wt% of the total mass of the dried humic acid, where less than 50% corresponded to reversibly adsorbed water. At higher temperatures (>110 °C), gradual decomposition resulting in the formation of carbon dioxide (110-240 °C), and carbon monoxide (140-240 °C) takes place. Hence, thermal treatment of Gohy-573 humic acid above 70 °C results in irreversible structural changes, that could affect chemical properties (e.g., complex formation) of the material.     

On the evaluation of the anisotropic-isotropic transition volume fraction for a semirigid polymer

It has been found that a method allowing the calculation of an anisotropic-isotropic transition volume fraction for a given semirigid polymer can be derived from the equations recently proposed by Blonski and coworkers to evaluate the equilibrium compositions of isotropic and anisotropic phases coexisting within ternary systems semirigid polymer/flexible polymer/solvent. By using the term anisotropic-isotropic transition volume fraction of a semirigid polymer we will refer to its smallest volume fraction giving an anisotropic character to liquid ternary phases also including a flexible polymer and a solvent. Its evaluation simplifies the construction of the corresponding ternary diagram and can also be seen as a fast and quantitative way of estimating the influence exerted by the semirigid polymer, through its intrinsic anisotropy, on ternary phases.     

Alkenyl Boronates: Synthesis and Applications

Organoboron compounds have become one of the most versatile building blocks in organic synthesis owing to their accessible and efficient conversion into many different functional groups. In particular, alkenyl boronates have received a great deal of attention as very reactive substrates in Suzuki–Miyaura cross‐coupling reactions. Accordingly, efforts towards the development of efficient methods to prepare this type of compound are ongoing. In this contribution, the progress in the search for synthetic routes for alkenyl boronates and their use in a variety of organic transformations is accounted.