On the efficiency of bile salt for stable suspension and isolation of single-walled carbon nanotubes—spectroscopic and microscopic investigations

In this contribution we present a systematic study on the dispersion of SWCNTs in a water-based solution of biocompatible detergent: sodium deoxycholate (DOC). By avoiding harsh chemical conditions, which are known to damage nanotubes structure, a stable SWCNTs suspension was created. Long term stirring of the solution led to preparation of a stable transparent solution, containing well-dispersed isolated SWCNTs. The as-prepared dispersion remained stable and clear for two months. Optical absorption spectroscopy was employed to measure SWCNTs suspension stability. Nanotube aggregation was evaluated through the tangential mode (G mode) present in the Raman spectrum. High-resolution transmission electron microscopy was employed to observe the mechanism of debundling process.     

Graph algorithms for DNA sequencing – origins,current models and the future

With the ubiquitous presence of next-generation sequencing in modern biological, genetic, pharmaceutical and medical research, not everyone pays attention to the underlying computational methods. Even fewer researchers know what were the origins of the current models for DNA assembly. We present original graph models used in DNA sequencing by hybridization, discuss their properties and connections between them. We also explain how these graph models evolved to adapt to the characteristics of next-generation sequencing. Moreover, we present a practical comparison of state-of-the-art DNA de novo assembly tools representing these transformed models, i.e. overlap and decomposition-based graphs. Even though the competition is tough, some assemblers perform better and certainly large differences may be observed in hardware resources utilization. Finally, we outline the most important trends in the sequencing field, and try to predict their impact on the computational models in the future.     

Regular Boundary Points and Exit Distributions for Parabolic Differential Operators

We show that the regularity of a boundary point for a parabolic differential operator in divergence form is under some geometric assumptions equivalent to the property that the density of the exit distribution for a time reversed process vanishes at that point. We give regularity and irregularity criterions for equations with variable coefficients. Thus, the known result on the Fulks measure that states that the density with respect to the Lebesgue measure vanishes at the point opposite to the center of the heat ball (see Fulks (Proc. Am. Math. Soc. 17, 6–11 1966)) can be extended to exit distributions for more general regions and parabolic differential operators.     

Relaxation and decoherence of orbital and spin degrees of freedom in quantum dots

The phonon induced mechanisms of relaxation/decoherence in quantum dots are analysed. A non-perturbative technique - a modification of the Davydov transformation appropriate to the localised particles is applied for solving the electron-phonon eigenvalue problem in a quantum dot at magnetic field presence. The decay rates for polaron relaxation via the anharmonicity induced channel are analysed in details. In particular, it is indicated that previous, of perturbative type, estimations of the anharminicity induced relaxation rates were too severe and after including the coherence effects they are of, at least, one order longer. The process of exciton dressing with phonons is also analysed as the unavoidable source of picosecond scale decoherence in optically driven nanostructures. A break-down of an instant Pauli spin blocking mechanism and a large enhancement of the Fröhlich constant for confined electrons are also addressed.     

The Poincaré Map of Randomly Perturbed Periodic Motion

A system of autonomous differential equations with a stable limit cycle and perturbed by small white noise is analyzed in this work. In the vicinity of the limit cycle of the unperturbed deterministic system, we define, construct, and analyze the Poincaré map of the randomly perturbed periodic motion. We show that the time of the first exit from a small neighborhood of the fixed point of the map, which corresponds to the unperturbed periodic orbit, is well approximated by the geometric distribution. The parameter of the geometric distribution tends to zero together with the noise intensity. Therefore, our result can be interpreted as an estimate of the stability of periodic motion to random perturbations. In addition, we show that the geometric distribution of the first exit times translates into statistical properties of solutions of important differential equation models in applications. To this end, we demonstrate three distinct examples from mathematical neuroscience featuring complex oscillatory patterns characterized by the geometric distribution. We show that in each of these models the statistical properties of emerging oscillations are fully explained by the general properties of randomly perturbed periodic motions identified in this paper.     

Biomimetic Bottlebrush Polymer Coatings for Fabrication of Ultralow Fouling Surfaces

Demand for long‐lasting antifouling surfaces has steered the development of accessible, novel, biocompatible and environmentally friendly materials. Inspired by lubricin (LUB), a component of mammalian synovial fluid with excellent antifouling properties, three block polymers offering stability, efficacy, and ease of use were designed. The bottlebrush‐structured polymers adsorbed strongly on silica surfaces in less than 10 minutes by a simple drop casting or online exposure method and were extremely stable in high‐salinity solutions and across a wide pH range. Antifouling properties against proteins and bacteria were evaluated with different techniques and ultralow fouling properties demonstrated. With serum albumin and lysozyme adsorption <0.2 ng cm^?2, the polymers were 50 and 25 times more effective than LUB and known ultralow fouling coatings. The antifouling properties were also tested under MPa compression pressures by direct force measurements using surface forces apparatus. The findings suggest that these polymers are among the most robust and efficient antifouling agents currently known.     

Kubo-Anderson oscillator and NMR of solid state

The analytical solution for the Kubo-Anderson oscillator with a fluctuating frequency omega for arbitrary distribution function p(omega) has been obtained. The obtained theoretical expression has been applied to consideration of some dynamical problems of solid state NMR, namely (1) dynamical transformation of NMR line shape and spin-echo signal and (2) the temperature transformation of the second moment of NMR line for the case, when the potential barrier for the mobility of magnetic nuclei is a stochastic function of time.     

Application of multiple quench parameters for confirmation of radionuclide identity in radioanalytical quality control

Journal of Radioanalytical and Nuclear Chemistry - Robust and reliable radiochemical analysis is the key factor in the appropriate disposal and management of radioactive wastes arising from the...     

Correction to: Foreword to the memorial issue for Professor Roberto Marassi

Journal of Solid State Electrochemistry -     

Late-Stage Functionalization by Chan–Lam Amination: Rapid Access to Potent and Selective Integrin Inhibitors

A late-stage functionalization of the aromatic ring in amino acid derivatives is described. The key step is a copper-catalysed diversification of a boronate ester by amination (Chan–Lam reaction) that can be carried out on a complex β-aryl-β-amino acid scaffold. This not only considerably extends the substrate scope of amination partners, but also delivers an array of potent and selective integrin inhibitors as potential treatment agents of idiopathic pulmonary fibrosis (IPF). This versatile chemical strategy, which is amenable to high-throughput-array protocols, allows the installation of pharmaceutically valuable heteroaromatic fragments at a late stage by direct coupling to NH heterocycles, leading to compounds with drug-like attributes. It thus constitutes a useful addition to the medicinal chemist's repertoire.