Gene expression analysis for high throughput screening applications

To meet growing needs for high throughput gene expression profiling, we established a new automated high throughput TaqMan RT-PCR method for quantitative mRNA expression analysis. In this method, the Allegro( trade mark ) (Zymark) system conducts all sample tracking and liquid handling steps, and ABI PRISM 7900 HT (Applied Biosystems) is used to conduct real-time determination of the C(t) value when amplification of PCR products is first detected and accumulation of inhibitory PCR products is unlikely to occur. The ABI PRISM 7900 HT Sequence Detection System features a real-time PCR instrument with 384-well-plate compatibility and robotic loading, and continuous wavelength detection, which enables the use of multiple fluorophores in a single reaction. The Allegro System offers an assembly line approach with a modular design that allows reconfiguration of the components to accommodate variations in the assay flow. In the present study, we have established and validated a new automated High Throughput (HT) TaqMan RT-PCR- based method for quantitative mRNA expression analysis. The data demonstrate that HT-Taqman PCR is a powerful tool that can be used for measuring low concentrations of mRNA, and is highly accurate, reproducible, and amenable to high throughput analysis. Results suggest that HT-TaqMan is a reliable method for the quantification of low-expression genes and a powerful tool with HT capability for target identification/validation, structure-activity relationship (SAR) study, compound selection for efficacy studies, and biomarker identification in drug discovery and development.     

Persistent (amino)(silyl)carbenes

(Amino)(silyl)carbenes, prepared by substitution reactions at a carbene center, can survive several days at 0 degrees C. These species are not push-pull carbenes as their phosphino analogues and therefore are excellent ligands for transition-metal centers.     

Characterization and determination of 28 elements in fly ashes collected in a thermal power plant in Argentina using different instrumental techniques

Different techniques were selected for comprehensive characterization of seven samples of fly ashes collected from the electrostatic precipitator of the San Nicolás thermal power plant (Buenos Aires, Argentina). Particle size was measured using laser based particle size analyzer. X-ray diffraction powder (XRD) analysis and scanning electron microscopy (SEM) were used to characterize the mineral phase present in the matrix consisting basically of aluminosilicates and large amounts of amorphous material. The predominant crystalline phases were mullite and quartz. Major and minors elements (Al, Ca, Cl, Fe, K, Mg, Na, S, Si and Ti) were detected by energy dispersive X-ray analysis (EDAX). Trace elements (As, Cd, Co, Cr, Cu, Mn, Ni, Pb, Se, V and Zn) content was quantified by inductively coupled plasma optical emission spectrometry (ICP OES). Different acid mixtures and digestion procedures were compared for subsequent ICP OES measurements of the dissolved samples. The digestion procedures used were: i) a mixture of FH + HNO₃ + HClO₄ (open system digestion); ii) a mixture of FH + HNO₃ (MW-assisted digestion); iii) a mixture of HF and aqua regia (MW-assisted digestion). Instrumental neutron activation analysis (INAA) was employed for the determination of As, Ba, Co, Cr, Ce, Cs, Eu, Fe, Gd, Hf, La, Lu, Rb, Sb, Sc, Sm, Ta, Tb, Th, U and Yb. The validation of the procedure was performed by the analysis of two certified materials namely, i) NIST 1633b, coal fly ash and ii) GBW07105, rock. Mean elements content spanned from 41870 μg g^− 1 for Fe to 1.14 μg g^− 1 for Lu. The study showed that Fe (41870 μg g^− 1) ? V (1137 μg g^− 1) > Ni (269 μg g^− 1) > Mn (169 μg g^− 1) are the main components. An enrichment, with respect to crustal average, in many elements was observed especially for As, V and Sb that deserve particular interest from the environmental and human health point of view.     

Anaerobic reduction of a sulfonated azo dye, Congo Red, by sulfate-reducing bacteria

The capacity for anaerobic decolorization of a sulfonated azo dye, Congo Red, by a strain of a sulfate-reducing bacterium was evaluated. After optimizing the growth rate of the bacteria on a simple carbon source and terminal electron acceptor pair, lactate and sulfate, respectively, the effect of the dye concentration on their growth rate was analyzed. The decolorization rate was affected by the dye concentration in the growth medium. The azo-bond cleavage mechanism of reductive decolorization with the formation of benzidine was consistent with the results, as this metabolite was identified by high-performance liquid chromatography. Several fractions of the culture medium, including lysed cell extracts, were examined for the capacity to reduce the azo dye. This reduction capacity was found in the culture medium in which the cells had previously grown. The results showed that the mechanism of reductive decolorization of this sulfonated azo dye was extracellular and nonenzymatic, consistent with the production of sulfide anion by the microorganisms while growing on lactate and sulfate. The sulfide anions were the cause of the reduction leading to the disappearance of color in the medium. To increase the rate of decolorization, the presence of ferrous ion was also necessary together with the lactate and sulfate substrates.     

The preparation of new chiral diphenyl-substituted macrocyclic polyether-diester compounds and their enantiomeric recognition of chiral organic ammonium salts

A series of chiral diphenyl-substituted macrocyclic polyether-diester ligands have been prepared from the chiral diphenyl-substituted tetraethylene glycol. Enantiomeric recogntion by the chiral diphenyl-substituted pyridino-diester-18-crown-6 compound ( 7 ) was studied by temperature dependent ¹H NMR spectroscopy in deuteriodichloromethane. This ligand exhibited chiral recognition when complexed with the hydrogen per-chlorate salts of (R)- and (S)-α-(1-naphthyl)ethylamine and (R)- and (S)-methyl phenylalaninate.     

Aureomycin nitrate,its preparation and identification

Summary Aureomycin hydrochloride does not show any promise as a reagent for qualitative detection or quantitative estimation of any of the common cations or aidons. The well developed crystals of the rather insoluble nitrate may be used for the identification of aureomycin. The low solubility of the nitrate may give a better stability as compared with the hydrochloride, which would be of interest to the pharmacist.

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Zusammenfassung Versuche mit Aureomycinhydrochlorid gaben keine Anhaltspunkte für eine Eignung dieser Verbindung als Reagens für die Auffindung oder Bestimmung der häufig angetroffenen Kationen oder Anionen. Die gut ausgebildeten Kristalle des wenig löslichen Nitrats können für die Erkennung von Aureomycin benützt werden. Die geringe Löslichkeit des Nitrats erhöht dessen Beständigkeit im Vergleich zum Hydrochlorid, was für Pharmazeuten von Interesse sein könnte.

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Résumé Le chlorhydrate d'auréomycine ne montre aucune propriété intéressante comme réactif de recherche qualitative ou d'estimation quantitative des cations et anions courants. On peut utiliser les cristaux bien développés de son nitrate assez peu soluble pour identifier l'auréomycine. La faible solubilité de ce nitrate peut lui conférer une meilleure stabilité que celle du chlorure ce qui est digne d'intérêt pour les pharmaciens.

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Dedicated to Prof. Dr.Hans Lieb at his 70th birthday.     

Molecular distillation

Molecular distillation was studied for the separation of tocopherols from soya sludge, both experimentally and by simulation, under different operating conditions, with good agreement. Evaporator temperatures varied from 100°C to 160°C and feed flow rates ranged from 0.1 to 0.8 kg/h. The process pressure was maintained at 10⁻⁶ bar, the feed temperature at 50°C, the condenser temperature at 60°C, and the stirring at 350 rpm. For each process condition, samples of both streams (distillate and residue) were collected and stored at −18°C before tocopherols analyses. Owing to the differences between molecular weights and vapor pressures of free fatty acids and tocopherols, tocopherols preferentially remained in the residue at evaporator temperatures of 100°C and 120°C, whereas for higher temperatures (140°C and 160°C) and lower feed flow rate, tocopherols tended to migrate to the distillate stream.     

Stereoselective diversity-oriented solution and solid-phase synthesis of tetrahydroquinoline-based polycyclic derivatives

A diversity-oriented solution and solid-phase synthesis of tetrahydroquinoline-based tricyclic derivatives has been achieved from enantiomerically pure, natural product-like bicyclic scaffold. The solution synthesis of enantiopure bicyclic scaffold was developed by asymmetric hetero Michael reaction. Our approach for the synthesis of polycyclic derivatives utilized regio- and stereoselective hetero Michael reaction and ring-closing metathesis as key steps in solution and on solid phase.     

Solution- and solid-phase synthesis of natural product-like tetrahydroquinoline-based polycyclics having a medium size ring

A solid-phase synthesis of tetrahydroquinoline-derived polycyclic 4, having a medium size ring with an enamide functionality, was achieved from tetrahydroquinoline derivative 3 in five steps with overall 40-45% yield. An enantiopure, tetrahydroquinoline-derived beta-amino ester, 1, was converted into compound 2 that has a free phenolic hydroxyl group as an anchoring site for solid-phase synthesis. The solid-phase worked well for this sequence, in which the synthesis of the unsaturated eight-membered enamide lactam was obtained by a ring-closing metathesis approach. Compound 4 is a novel, natural product-like polycyclic derivative that could further be utilized in library generation for developing small molecule chemical probes.     

Effects of citrate on the composition and enzymic coagulation of colloidal bovine casein aggregates

Colloidal casein aggregates (CCA) prepared from soluble whole bovine caseinates in the presence of Ca²⁺ and phosphate (Pi) ions by addition of different citrate (Cit) concentrations showed different mineral and proteic composition. Citrate concentration conditions the Ca and Pi concentrations incorporated into CCA, probably due to the complexing effect of this anion on calcium. A significant change in the incorporated Ca/Pi ratio at 8 mM citrate could very likely be associated to changes in CCA net charge. The incorporation of individual caseins to the colloidal particles obtained, as well as their average size and size distribution, depended also on the Cit concentration used [Cit]_P. α_S- and β-caseins assembled in the CCA structure sharply decreased at a [Cit]_P higher than 15 mM, i.e., at a low Ca²⁺ concentration in the aggregates, showing that the presence of this cation is necessary for the incorporation of these caseins. An inverse relationship between the aggregation step rate in CCA enzymic coagulation and their average size was observed. The aggregation rate vs the average size curve obtained at [Cit]_P 8 mM clearly differed from the curves obtained at 10 and 12 mM, respectively, a fact probably related to a change in the CCA net charge. This behavior showed the effect of citrate concentration on CCA functional properties.