Diphenylacetic Acid from Benzilic Acid: An Ecologically and Economically Improved Procedure

Overall yields better than 90% of pure diphenylacetic acid may be obtained by the route benzilic acid — benzilic acid dimeric ester — diphenylacetic acid.     

Microchemostat-microbial continuous culture in a polymer-based, instrumented microbioreactor

In a chemostat, microbial cells reach a steady state condition at which cell biomass production, substrates and the product concentrations remain constant. These features make continuous culture a unique and powerful tool for biological and physiological research. We present a polymer-based microbioreactor system integrated with optical density (OD), pH, and dissolved oxygen (DO) real-time measurements for continuous cultivation of microbial cells. Escherichia coli (E. coli) cells are continuously cultured in a 150 microL, membrane-aerated, well-mixed microbioreactor fed by a pressure-driven flow of fresh medium through a microchannel. Chemotaxisial back growth of bacterial cells into the medium feed channel is prevented by local heating. Using poly(ethylene glycol) (PEG)-grafted poly(acrylic acid) (PAA) copolymer films, the inner surfaces of poly(methyl methacrylate) (PMMA) and poly(dimethylsiloxane) (PDMS) of the microbioreactor are modified to generate bio-inert surfaces resistant to non-specific protein adsorption and cell adhesion. The modified surfaces of microbioreactor effectively reduce wall growth of E. coli for a prolonged period of cultivation. Steady state conditions at different dilution rates are demonstrated and characterized by steady OD, pH, and DO levels.     

The redox chemistry of the covalently immobilized native and low-pH forms of yeast iso-1-cytochrome c

Cyclic voltammetry experiments were carried out on native Saccharomyces cerevisiae iso-1-cytochrome c and its C102T/N62C variant immobilized on bare polycrystalline gold electrode through the S-Au bond formed by a surface cysteine. Experiments were carried out at different temperatures (5-65 degrees C) and pH values (1.5-7). The E degrees ' value at pH 7 (+370 mV vs SHE) is approximately 100 mV higher than that for the protein in solution. This difference is enthalpic in origin and is proposed to be the result of the electrostatic repulsion among the densely packed molecules onto the electrode surface. Two additional electrochemical waves are observed upon lowering the pH below 5 (E degrees ' = +182 mV) and 3 (E degrees ' = +71 mV), which are attributed to two conformers (referred to as "intermediate" and "acidic", respectively) featuring an altered heme axial ligation. This is the first determination of the reduction potential for low-pH conformers of cytochrome c in the absence of denaturants. Since the native form of cytochrome c can be restored, bringing back the pH to neutrality, the possibility offered by this transition to reversibly modulate the redox potential of cytochrome c is appealing for bioelectronic applications. The immobilized C102T/N62C variant, which differs from the native protein in the orientation of the heme group with respect to the electrode, shows very similar reduction thermodynamics. For both species, the rate constant for electron transfer between the heme and the electrode increases for the acidic conformer, which is also found to act as a biocatalytic interface for dioxygen reduction.     

Study of conformational properties of a biologically active peptide of fibronectin by circular dichroism, NMR and molecular dynamics simulation

Circular dichroism (CD), and NMR spectra have been recorded and molecular dynamics (MD) simulations have been performed in water and water-trifluoroethanol (TFE) mixed solvent for a synthetic biologically active 13-amino-acid fragment of human fibronectin and two related peptides. The CD results are interpreted on the basis of statistical analyses of MD trajectories and of ensuing calculations of CD spectra based on Schellman's matrix method. It is observed that the peptide conformation is quite variable in water and loses its mobility with the addition of TFE. (1)H-NOE data were found to be consistent with the most abundant calculated conformation.     

The Lewis acid-catalyzed nazarov reaction of 2-(n-methoxycarbonylamino)-1,4-pentadien-3-ones

[reaction: see text] A highly efficient carbonylative Suzuki-Miyaura coupling reaction of lactam-derived vinyl triflates and alkenylboronic acids afforded 2-(N-methoxycarbonylamino)-1,4-pentadien-3-ones as suitable substrates for the Nazarov reaction. The most competent Lewis acids for the Nazarov reaction were Cu(OTf)(2) (2 mol %) and Sc(OTf)(3) (3 mol %) in DCE, which provided the Nazarov products in excellent yield. As both the carbonylative coupling and the subsequent Nazarov reaction were high yielding, the overall methodology is a concise and efficient route to [1]pyrindine systems.     

Use of vancomycin silica stationary phase in packed capillary electrochromatography: III. enantiomeric separation of basic compounds with the polar organic mobile phase

The separation of basic compounds into their enantiomers was achieved using capillary electrochromatography in 50 or 75 microm inner diameter (ID) fused-silica capillaries packed with silica a stationary phase derivatized with vancomycin and mobile phases composed of mixtures of polar organic solvents containing 13 mM ammonium acetate. Enantiomer resolution, electroosmotic flow, and the number of theoretical plates were strongly influenced by the type and concentration of the organic solvent. Mobile phases composed of 13 mM ammonium acetate dissolved in mixtures of acetonitrile/methanol, ethanol, n-propanol, or isopropanol were tested and the highest enantioresolutions were achieved using the first mobile phase, allowing the separation of almost all investigated enantiomers (9 from 11 basic compounds). The use of capillaries with different ID (50 and 75 microm ID) packed with the same chiral stationary phase revealed that a higher number of theoretical plates and higher enantioresolution was achieved with the tube with lowest ID.     

Growth of polyaromatic molecules via ion-molecule reactions: an experimental and theoretical mechanistic study

The reactivity of naphthyl cations with benzene is investigated in a joint experimental and theoretical approach. Experiments are performed by using guided ion beam tandem mass spectrometers equipped with electron impact or atmospheric pressure chemical ion sources to generate C(10)H(7)(+) with different amounts of internal excitation. Under single collision conditions, C-C coupling reactions leading to hydrocarbon growth are observed. The most abundant ionic products are C(16)H(13)(+), C(16)H(n)(+) (with n=10-12), and C(15)H(10)(+). From pressure-dependent measurements, absolute cross sections of 1.0±0.3 and 2±0.6 A?(2) (at a collision energy of about 0.2 eV in the center of mass frame) are derived for channels leading to the formation of C(16)H(12)(+) and C(15)H(10)(+) ions, respectively. From cross section values a phenomenological total rate constant k=(5.8±1.9)×10(-11) cm(3) s(-1) at an average collision energy of about 0.27 eV can be estimated for the process C(10)H(7)(+)+C(6)H(6)→all products. The energy behavior of the reactive cross sections, as well as further experiments performed using partial isotopic labeling of reagents, support the idea that the reaction proceeds via a long lived association product, presumably the covalently bound protonated phenylnaphthalene, from which lighter species are generated by elimination of neutral fragments (H, H(2), CH(3)). A major signal relevant to the fragmentation of the initial adduct C(16)H(13)(+) belongs to C(15)H(10)(+). Since it is not obvious how CH(3) loss from C(16)H(13)(+) can take place to form the C(15)H(10)(+) radical cation, a theoretical investigation focuses on possible unimolecular transformations apt to produce it. Naphthylium can act as an electrophile and add to the π system of benzene, leading to a barrierless formation of the ionic adduct with an exothermicity of about 53 kcal mol(-1). From this structure, an intramolecular electrophilic addition followed by H shifts and ring opening steps leads to an overall exothermic loss (-7.1 kcal mol(-1) with respect to reagents) of the methyl radical from that part of the system which comes from benzene. Methyl loss can take place also from the "naphthyl" part, though via an endoergic route. Experimental and theoretical results show that an ionic route is viable for the growth of polycyclic aromatic species by association of smaller building blocks (naphthyl and phenyl rings) and this may be of particular relevance for understanding the formation of large molecules in ionized gases.     

Heterocycles from heterocycles. - III[1]. 1,3,5-trisubstituted hexahydro-1,3,5-triazines-2-ones from 1,3,5-trisubstituted hexahydro-1,3,5-triazines and organic isocyanates

1,3,5-Triscubstituted hexahydro-1,3,5-trazin-2-ones 3 are easily obtained by the reaction of 1,3,5-trisub-stituted hexahydro-1,3,5-triazines 1 with organic isocyanates 2 . The reaction is believed to occur by the sequential addition to 2 of two molecules of the monomeric N-methyleneamines in thermal equilibrium with 1. Substituent scrambling at the operating temperature (120°) was negligible. The crystal structure of 1,3,5-triphenylhexahydro-1,3,5-triazin-2-one (3a) has been determined by X-ray diffraction methods.     

A study of the mechanism of the oxidative cyclization of benzaldehyde semicarbazones induced by cupric perchlorate in acetonitrile

Treatment of benzaldehyde semicarbazones 1a-i with cupric perchlorate in acetonitrile at 40 provided selectively the corresponding 1,2,4-triazolin-5-ones 2a-i . The relative rate constants for 2a-i formation were determined by the competitive method. The results obtained showed that electron-donating substituents (methyl and methoxy) increase the reaction rate, while the reverse was found for electron-withdrawing substituents (chloro and nitro group). The reactivity data are discussed on the grounds of two possible mechanisms.