Analysis of native carotenoid composition of sweet bell peppers by serially coupled C30 columns

Serial coupled columns reversed-phase separations in high-performance liquid chromatography can be a useful tool for the analysis of complex real samples. The great difficulties found when analyzing complex carotenoid samples, due to the high natural variability of these compounds, as well as to the presence of carotenoid esters, are well documented. In the present contribution, the applicability of connecting two C30 columns to increase significantly the separation power, resolution and peak capacity for the analysis of carotenoids in a complex carotenoid sample, like sweet bell peppers, has been shown for the first time. By using LC coupled to PDA/APCI-MS detectors, 56 different carotenoids have been detected in red sweet bell peppers. By using two serial coupled C30 columns a peak capacity of 95.4 was obtained, compared with 73 achieved using a single column. Moreover, resolution greatly improved between different critical peaks when using two serial coupled C30 columns, compared with a single column. Interestingly, free carotenoids, mono-esters and diesters were quantitatively equally represented (around 33% for each different class) in red sweet bell pepper, showing, therefore, a value for the ratio of mono-esters/diesters of around 1, which could be considered a parameter of typicality. Free beta-carotene (12.6%), capsanthin-C14:0 (8.4%), and capsanthin-C12:0-C14:0 (8.9%) were the most abundant carotenoids in the three different classes of red sweet bell pepper. No carotenoid esters were detected in either yellow or green sweet bell peppers. The application of such methodology in the analysis of other complex carotenoid matrices could be a future objective of research.     

Nonlocal cauchy problems and their controllability for semilinear differential inclusions with lower Scorza-Dragoni nonlinearities

In this paper we prove the existence of mild solutions and the controllability for semilinear differential inclusions with nonlocal conditions. Our results extend some recent theorems.     

A new family of regular semivalues and applications

We define a new family of values for cooperative games, including as a particular case the Shapley value. They are defined on the collection of the unanimity games, then extended by linearity. Our most relevant result shows that the family of the weighting coefficients characterizing the values so defined is an open curve on the simplex of the regular semivalues. We give an explicit formula for the values when the parameter characterizing the family is a natural number and we offer an algorithm to calculate them in weighted majority games, slightly extending previous results (see Bilbao et al., TOP, 8:191–213, 2000). The paper ends with two applications. The first one is classical, and serves to see how the indices behave with respect to the Shapley and Banzhaf values in the case of the EU parliament and in the UN Security Council. The second one is much more recent: it deals with the microarray games, introduced in Moretti et al. (TOP, 15:256–280, 2007), which are average of unanimity games. The idea is to rank genes taken from DNA of patients affected by a specific disease, with the aim of singling out a group of genes potentially responsible of the disease. In this last case we consider some microarray data available on the net and concerning some specific diseases and we show that several genes mentioned in the medical literature as potentially responsible for the onset of the disease are present in the first places according to our rankings.     

CE analysis and molecular characterisation of depurinated DNA samples

A DNA sample was partially degraded by scalar heat-acid treatments to study the extent of apurinic-apyrimidinic (A-P) lesions produced along the molecule. A CE-UV method allowed us to measure the rate of depurination at pH 5.0 and 70°C which was calculated to be 5.41×10(-6) s(-1) for adenine and 6.27×10(-6) s(-1) for guanine. CE identified depurination on treated samples when it occurred with a loss of >4% of the basic moieties. The molecular features of the A-P enriched samples were investigated by using molecular assays (agarose gel electrophoresis, UV spectrophotometry and quantitative PCR) and the consistency of the results of the STR typing were compared with the degree of depurination of the PCR template. The treated DNA samples showed molecular features such as fragmentation, altered OD(260) /OD(280) ratios and decreased ability of the quantitative PCR to synthesise the human target, related to the severity of depurination. A satisfactory correlation between the degree of damage and the amount of residual PCR-sensitive target sequences was also demonstrated (r(2) =0.9717). The conventional and mini-STR typing of the samples showed that the genetic outcome was influenced by a depurination damage that exceeded 4% when locus drop-outs and artefactual PCR results were evident. As the success of STR typing depends on the integrity of the DNA recovered from the samples, the CE-UV, physical and molecular assays described here are proposed as a set of useful methods in the analysis of certain forensic and clinical samples, for a critical evaluation of the outcome of the genetic testing.     

IBIsCO: a molecular dynamics simulation package for coarse-grained simulation

IBIsCO is a parallel molecular dynamics simulation package developed specially for coarse-grained simulations with numerical potentials derived by the iterative Boltzmann inversion (IBI) method (Reith et al., J Comput Chem 2003, 24, 1624). In addition to common features of molecular dynamics programs, the techniques of dissipative particle dynamics (Groot and Warren, J Chem Phys 1997, 107, 4423) and Lowe-Andersen dynamics (Lowe, Europhys Lett 1999, 47, 145) are implemented, which can be used both as thermostats and as sources of friction to compensate the loss of degrees of freedom by coarse-graining. The reverse nonequilibrium molecular dynamics simulation method (Müller-Plathe, Phys Rev E 1999, 59, 4894) for the calculation of viscosities is also implemented. Details of the algorithms, functionalities, implementation, user interfaces, and file formats are described. The code is parallelized using PE_MPI on PowerPC architecture. The execution time scales satisfactorily with the number of processors.     

π-Electron manipulation of the 5,6-dihydroxyindole/quinone system by 3-alkynylation: mild acid-mediated entry to (cross)-conjugated scaffolds and paradigms for medium-tunable chromophores

5,6-Dihydroxyindole-based systems engender increasing interest for the design and implementation of new functional aromatic scaffolds and eumelanin-like materials with tailored absorption and electronic properties. However, studies aimed at elucidating the influence of external π-conjugating groups on the redox properties and acid-induced reactivity of these highly oxidizable indolic platforms are lacking. We report herein the synthesis (as acetyl derivatives) and chemical/quantum chemical characterization of the first π-extended 5,6-dihydroxyindole derivatives, 3-ethynyl-5,6-dihydroxyindole (1) and 3,3'-(1,2-ethynediyl)bis-5,6-dihydroxyindole (2), in order to understand whether and how β extension of the enamine-like pyrrole sector affects the absorption properties, redox behavior, and protonation equilibria at both the o-diphenol and quinone levels. Oxidation of 1 and 2 proceeded smoothly to generate dark insoluble materials with eumelanin-like UV properties. On exposure to phosphate buffer at pH 3, 1 was rapidly converted to 3-acetyl-5,6-dihydroxyindole (5) and, in the presence of 5,6-dihydroxyindole, to the cross-conjugated 3,3'-ethenylidenebis-5,6-dihydroxyindole (6). DFT calculations on 1 and 2 and their quinones in their pristine states and after protonation provided a mechanistic frame to rationalize the unusual acid-mediated chemistry of 1 and disclosed 2-quinone as the prototype of a novel class of medium-dependent chromophores. The ethynyl(ene) structural motif is thus proposed as the key to new tunable π-electron extended 5,6-dihydroxyindole/5,6-indolequinone paradigms for the rational design of alkyne-containing hybrid eumelanin-type polymers.     

An efficient numerical tool for dose deposition prediction applied to synchrotron medical imaging and radiation therapy

Medical imaging and radiation therapy are widely used synchrotron‐based techniques which have one thing in common: a significant dose delivery to typically biological samples. Among the ways to provide the experimenters with image guidance techniques indicating optimization strategies, Monte Carlo simulation has become the gold standard for accurately predicting radiation dose levels under specific irradiation conditions. A highly important hampering factor of this method is, however, its slow statistical convergence. A track length estimator (TLE) module has been coded and implemented for the first time in the open‐source Monte Carlo code GATE/Geant4. Results obtained with the module and the procedures used to validate them are presented. A database of energy‐absorption coefficients was also generated, which is used by the TLE calculations and is now also included in GATE/Geant4. The validation was carried out by comparing the TLE‐simulated doses with experimental data in a synchrotron radiation computed tomography experiment. The TLE technique shows good agreement versus both experimental measurements and the results of a classical Monte Carlo simulation. Compared with the latter, it is possible to reach a pre‐defined statistical uncertainty in about two to three orders of magnitude less time for complex geometries without loss of accuracy.     

Syndiotactic polystyrene films with a cocrystalline phase including carvacrol guest molecules

A monoclinic δ‐clathrate form of syndiotactic polystyrene (s‐PS) with carvacrol (a relevant natural phenolic antimicrobial) has been prepared and characterized by X‐ray diffraction. Very informative are Fourier transform infrared spectra, in particular their OH stretching region that shows a narrow peak and a broad band, corresponding to carvacrol molecules being isolated guest of the co‐crystalline phase or dissolved in the amorphous phase, respectively. Analogous spectral features allow discriminating, for many different s‐PS guests, between molecules being in crystalline or in amorphous phases. s‐PS co‐crystalline films with carvacrol molecules being prevailingly (more than 90%) guest of the co‐crystalline phase have been prepared, even for high carvacrol content (up to 10–11 wt %). The location of most antimicrobial molecules in the crystalline phase assures a decrease of desorption diffusivity of two to three orders and hence long‐term antimicrobial release. © 2014 Wiley Periodicals, Inc. J. Polym. Sci. Part B: Polym. Phys. 2014 , 52, 657–665     

Selective Mono- or Dialkoxylation of 2,4,6-Trichloro-1,3,5-triazine in Solid-Liquid Phase Transfer Conditions

In solid-liquid phase transfer conditions, both the primary and the secondary alcohols react cleanly with 2,4, 6-trichloro-1,3,5-triazine to give the corresponding mono or dialkoxy derivatives depending on the reagent molar ratio.