Elucidation of the Active Conformation of Vancomycin Dimers with Antibacterial Activity against Vancomycin‐Resistant Bacteria

Covalently linked vancomycin dimers have attracted a great deal of attention among researchers because of their enhanced antibacterial activity against vancomycin‐resistant strains. However, the lack of a clear insight into the mechanisms of action of these dimers hampers rational optimization of their antibacterial potency. Here, we describe the synthesis and antibacterial activity of novel vancomycin dimers with a constrained molecular conformation achieved by two tethers between vancomycin units. Conformational restriction is a useful strategy for studying the relationship between the molecular topology and biological activity of compounds. In this study, two vancomycin units were linked at three distinct positions of the glycopeptide (vancosamine residue (V), C terminus (C), and N terminus (N)) to form two types of novel vancomycin cyclic dimers. Active NC‐VV‐linked dimers with a stable conformation as indicated by molecular mechanics calculations selectively suppressed the peptidoglycan polymerization reaction of vancomycin‐resistant Staphylococcus aureus in vitro. In addition, double‐disk diffusion tests indicated that the antibacterial activity of these dimers against vancomycin‐resistant enterococci might arise from the inhibition of enzymes responsible for peptidoglycan polymerization. These findings provide a new insight into the biological targets of vancomycin dimers and the conformational requirements for efficient antibacterial activity against vancomycin‐resistant strains.     

Crystal structures of AgAF6 (A = P, As, Sb, Nb, Ta) at ambient temperatures

Structures of AgAF₆ (A=Sb, Ta) have been determined by X-ray single crystal studies at ambient temperatures. AgSbF₆ crystallizes in space group Ia with a=979.85(4) pm, V=9.4076(12)×10⁸ pm³, z=8, and AgTaF₆ crystallizes in space group P4₂/mcm with a=499.49(4) pm, c=960.51(8) pm, V=2.3964(6)×10⁸ pm³, z=2. Only the crystal system and cell parameters were obtained for the isomorphic AgNbF₆; primitive tetragonal, a=497.80(10) pm, b=960.40(10) pm, V=2.3799(12)×10⁸ pm³, z=2. The results of the Raman spectroscopy of AgAF₆ support the obtained structures. The structures are discussed by comparing with that of AgPF₆ and AgAsF₆ which have recently been determined in a series of our study.     

New Microporous and Mesoporous Materials: Elucidation of Their Structures by Electron Microscopy

We have recently published three papers (P. Wagner et al., Phys. Chem. 103 (1999) 8245; S. Inagaki et al., J. Am. Chem. Soc. 121 (1999) 9611; A. Carlsson et al., J. Electron Microscopy 48 (1999) 795) that herald a new approach to structural solutions in micro- and mesoporous solid state materials. Among these materials are the first hybrid inorganic–organic mesoporous materials, synthesized using the organosilane compound 1,2-bis(trimethoxysilyl) ethane (BTME). Both organic and inorganic fragments are distributed completely uniformly at the molecular scale in the mesoporous walls. Two distinct phases with two- and three-dimensional (2d- and 3d-) hexagonal periodic pore-arrangements have been detected. We have also recently reported another new cubic hybrid phase with a decaoctahedral crystal morphology. Two new approaches for solving the structures of porous materials from either electron diffraction (ED) or high-resolution electron microscope (HREM) observations have also been developed. The former was successfully applied by combining direct methods for structural analysis of the new microporous crystal SSZ-48, which crystallizes only in very small crystals. The latter technique was applied to 3d-structural analysis of the mesoporous material MCM-48. The structure solutions, in the latter case, are obtained uniquely without preassumed models or parameterization, unlike previous reports.     

Stellatolide H,a cytotoxic peptide lactone from a deep-sea sponge Discodermia sp.

Stellatolide H (1) was isolated from a deep-sea sponge Discodermia sp. as the cytotoxic constituent. The planar structure of 1 was elucidated on the basis of the NMR spectroscopic and mass spectrometric data. The absolute configurations of the constituent amino acid residues were determined by the Marfey’s method. Stellatolide H (1) is a peptide lactone of the callipeltin class with its N-terminus blocked by 3-hydroxy-6,8-dimethyldeca-(4Z,6E)-dienoic acid (Hdda).     

Biphenyl ether and biphenyl quinolizidine lactone alkaloids from Heimia salicifolia

Three new biphenyl ether quinolizidine lactone alkaloids (1–3) and 13 new biphenyl quinolizidine lactone alkaloids (4–16) were isolated from Heimia salicifolia (Lythraceae) together with seven known alkaloids. Their structures were determined by spectroscopic analyses and chemical conversions.     

First total synthesis of cyclic pentadepsipeptides Hikiamides A–C

The first total syntheses of naturally occurring cyclodepsipeptides Hikiamides A–C are described. The key linear pentapeptide precursors, prepared efficiently via Fmoc-solid-phase synthesis, were cyclized in dilute solution to provide the target Hikiamides A–C. The structures of the synthetic Hikiamides A–C were characterized by NMR and HRMS spectroscopy which were in agreement with those of natural products.     

Determination of ppt levels of atmospheric volatile organic compounds in Yakushima, a remote south-west island of Japan

An analytical method was utilized to detect ppt levels of VOCs in air. The method was based on the US-EPA method TO-14, consisting of canister sampling, three module enrichment and GC/MS analysis. Target compounds included chlorofluorocarbons (four kinds), benzene and its derivatives (14), halogenated hydrocarbons (20), and others (three). The minimum detection limits of the method for the target compounds ranged from 0.016 to 0.040 ppb (0.06–0.23 μg/m³). The recoveries of the target compounds ranged from 77 to 113% and relative coefficients of variation (n=4) were 3.0–9.0%. The sampled air was stable for at least 14 days after pressurizing with humidified nitrogen gas at 200 kPa (absolute pressure). The method was applied to analyze the VOCs in the air of Yakushima, a remote island of south-west Japan where no distinct local pollution source is considered.     

Application of 1,2,3,5,6,7-hexahydropyrrolizinium perchlorate in the synthesis of 7a-substituted hexahydro-1h-pyrrolizines

The method for preparing 7a-substituted hexahydro-1H-pyrrolizines 2 from 1,2,3,5,6,7-hexahydropyrrol-izinium Perchlorate (3) was investigated, by which introduction of a wide variety of functionalities on C(7a) could be achieved easily.