Electrospray ionization mass spectrometry and hydrogen/deuterium exchange for probing the interaction of calmodulin with calcium

The extent of H/D exchange of the protein calmodulin in solution was monitored by mass spectrometry following electrospray ionization (ESI) of the protein. In the absence of Ca2+, approximately 115 protons are exchanged for deuteriums after 60 min. As the calmodulin is titrated with Ca2+, the extent of exchange decreases significantly (i.e., by 24 protons), indicating Ca(2+)-induced folding of the protein to a tighter, less solvent-accessible form. The extent of H/D exchange ceases to decrease when the amount of added Ca2+ is sufficient to convert greater than 80% of the calmodulin to a form bound by four calcium ions. Lysozyme, a protein of similar molecular weight, does not show a significant decrease in the extent of H/D exchange as it binds to Ca2+, indicating that the changes in H/D exchange for calmodulin reflect tertiary structural change that occur upon binding with Ca2+.     

Synthesis of functionalized 1‐trimethylsiloxy‐substituted O‐trimethylsilyl alkylphosphonites and their derivatives

Nucleophilic addition of trimethylsilyl esters of tricoordinate organophosphorus acids to various functionalized aldehydes with vinyl, aryl, and heterocyclic fragments is proposed as a convenient method for the synthesis of new 1‐trimethylsiloxysubstituted alkylphosphonites and their derivatives at mild conditions. Also the new functionalized derivatives of these phosphonites, including amino groups as well as certain properties of these compounds as important precursors of new functionalized 1‐hydroxyalkylorganophosphorus acids, are presented. © 2008 Wiley Periodicals, Inc. Heteroatom Chem 19:352–359, 2008; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20430     

Expression profile of the entire family of <Emphasis Type="Italic">Adhesion</Emphasis>G protein-coupled receptors in mouse and rat

Background  

The Adhesion G protein-coupled receptors (GPCRs) are membrane-bound receptors with long N termini. This family has 33 members in humans. Several Adhesion GPCRs are known to have important physiological functions in CNS development and immune system response mediated by large cell surface ligands. However, the majority of Adhesion GPCRs are still poorly studied orphans with unknown functions.     

Incubation in the UV irradiation of condensed CHCl<Subscript>3</Subscript> solids

Matrix-Assisted-Pulsed-Laser-Evaporation (MAPLE) has emerged as a very promising technique for the deposition of polymers and biopolymers in intact and functional form. However, our understanding of the mechanism of the procedure is still limited. Here, we examine laser-induced (248 nm) desorption from condensed CHCl₃ solid, which has been employed as a potential matrix in MAPLE. We find that the absorption of the condensed halocarbon increases significantly with successive laser pulses, as a result of the formation and accumulation of strongly absorbing products. This results in a significant increase of the ejection efficiency in the irradiation with successive laser pulses. Thus, in studies employing multi-pulse irradiation protocols, the attained laser-induced temperatures are considerably higher than what is estimated on the basis of the absorption coefficient of CHCl₃. Thus, contrary to previous suggestions, ablation of CHCl₃ frozen solid at 248 nm may be due to explosive boiling. A number of additional implications are also discussed.     

Evolution of the degree of polarization of an electromagnetic Gaussian Schell-model beam in a Gaussian cavity

The interaction of an electromagnetic Gaussian Schell-model (EGSM) beam with a Gaussian cavity is analyzed. In particular, the evolution of the degree of polarization of the EGSM beam is investigated. The results show that the behavior of the degree of polarization depends on both the statistical properties of the source that generates the EGSM beam and the parameters of the cavity.     

Structure and linear spectroscopic properties of near IR polymethine dyes

We performed a detailed experimental investigation and quantum-chemical analysis of a new series of near IR polymethine dyes with 5-butyl-7,8-dihydrobenzo[cd]furo[2,3-f]indolium terminal groups. We also synthesized and studied two neutral dyes, squaraine and tetraone, with the same terminal groups and performed a comparison of the spectroscopic properties of this set of “near IR” dyes (polymethine, squaraine, and tetraone) with an analogous set of “visible” dyes with simpler benzo[e]indolium terminal groups. From these measurements, we find that the dyes with dihydrobenzo[cd]furo[2,3-f]indolium terminal groups are characterized by a remarkably large shift ≈300 nm (≈200 nm for tetraone) of their absorption bands towards the red region. We discuss the difference in electronic structure for these molecules and show that the “near IR” dyes are characterized by an additional weak fluorescence band from the higher lying excited states connected with the terminal groups. Absorption spectra for the longest polymethines are solvent-dependent and are characterized by a broadening of the main band in polar solvents, which is explained by ground state symmetry breaking and reduced charge delocalization within the polymethine chromophore. The results of these experiments combined with the agreement of quantum chemical calculations moves us closer to a predictive capability for structure-property relations in cyanine-like molecules.     

Mössbauer spectroscopy of 151 europium dicarboxylates

We have previously reported the stability of europium oxalate compared to ammonium europium bis-salen and europium benzoate. We now extend the dicoarboxylic acid chain of the oxalate by introducing additional-CH₂-groups in the dicarboxylate ligands by using malonate, succinate, glutarate and adipate. Additionally, we have examined the effect of alterations in the succinate dianion by introducing functional groups such as [C = C]in the case of the maleide and-OH group in the case of the malide. This study is an attempt to further characterize these compounds. Infrared spectra were used to characterize bridging and chelating dicarboxylates while Mössbauer spectroscopy measurements were used to gain better insight into the structure of heterocyclic “cages” containing two Eu^3?+? ions and two dianions.     

A hybrid WKB–Galerkin method applied to a piezoelectric sandwich plate vibration problem considering shear force effects

This paper deals with the problem of dynamic loading of a piezoelectric sandwich plate. The objective of the analysis is to obtain a closed form approximate analytical solution for the equilibrium equations of the loaded plate considering time variant damping, and to discuss the shear force effect for the problem. The solution to the problem is obtained using a hybrid WKB–Galerkin method.     

From (Idealized) Exact Causality-Preserving Transformations to Practically Useful Approximately-Preserving Ones: A General Approach

It is known that every causality-preserving transformation of Minkowski space-time is a composition of Lorentz transformations, shifts, rotations, and dilations. In principle, this result means that by only knowing the causality relation, we can determine the coordinate and metric structure on the space-time. However, strictly speaking, the theorem only says that this reconstruction is possible if we know the exact causality relation. In practice, measurements are never 100% accurate. It is therefore desirable to prove that if a transformation approximately preserves causality, then it is approximately equal to an above-described composition. Such a result was indeed proven, but only for a very particular case of approximate preservation. In this paper, we prove that simple compactness-related ideas can lead to a transformation of the exact causality-preserving result into an approximately-preserving one.