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11.
Okimoto N Nakamura T Suenaga A Futatsugi N Hirano Y Yamaguchi I Ebisuzaki T 《Journal of the American Chemical Society》2004,126(40):13132-13139
Two molecular dynamics (MD) simulations totaling 25 ns of simulation time of monomeric scytalone dehydratase (SD) were performed. The enzyme has a ligand-binding pocket containing a cone-shaped alpha+beta barrel, and the C-terminal region covers the binding pocket. Our simulations clarified the difference in protein dynamics and conformation between the liganded protein and the unliganded protein. The liganded protein held the ligand molecule tightly and the initial structure was maintained during the simulation. The unliganded protein, on the other hand, fluctuated dynamically and its structure changed largely from the initial structure. In the equilibrium state, the binding pocket was fully solvated by opening of the C-terminal region, and the protein dynamics was connected with hydration water molecules entry into and release from the binding pocket. In addition, the cooperative motions of the unliganded protein and the hydration water molecules produced the path through the protein interior for ligand binding. 相似文献
12.
Direct Introduction of a Dimesitylboryl Group Using Base‐Mediated Substitution of Aryl Halides with Silyldimesitylborane
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Dr. Eiji Yamamoto Kiyotaka Izumi Ryosuke Shishido Prof. Dr. Tomohiro Seki Noriaki Tokodai Prof. Dr. Hajime Ito 《Chemistry (Weinheim an der Bergstrasse, Germany)》2016,22(49):17547-17551
The first dimesitylboryl substitution of aryl halides with a silylborane bearing a dimesitylboryl group in the presence of alkali‐metal alkoxides is described. The reactions of aryl bromides or iodides with Ph2MeSi?BMes2 and Na(OtBu) afforded the desired aryl dimesitylboranes in good to high yields and with high borylation/silylation ratios. Selective reaction of the sterically less‐hindered C?Br bond of dibromoarenes provided monoborylated products. This reaction was used to rapidly construct a D‐π‐A aryl dimesityl borane with a non‐symmetrical biphenyl spacer. 相似文献
13.
Masahiro Yodoshi Natsumi Ikeda Naoko Yamaguchi Mana Nagata Noriaki Nishida Kazuaki Kakehi Takao Hayakawa Shigeo Suzuki 《Electrophoresis》2013,34(22-23):3198-3205
We have identified novel CE conditions for the separation of 7‐amino‐4‐methylcoumarin‐labeled monosaccharides and oligosaccharides from glycoproteins. Using a neutrally coated capillary and alkaline borate buffer containing hydroxypropylcellulose and ACN, saccharide derivatives form anionic borate complexes, which move from the cathode to the anode in an electric field and are detected near the anodic end. Excess labeling reagents and other fluorescent products remain at the cathodic end. Fluorimetric detection using an LED as a light source enables determination of monosaccharide derivatives with good linearity between at least 0.4 and 400 μM, may correspond to 140 amol to 140 fmol. The lower LOD (S/N = 5) is only 80 nM in the sample solution (ca. 28 amol). The results were comparable to reported values using fluorometric detection LC. The method was also applied to the analysis of oligosaccharides that were enzymatically released from glycoproteins. Fine resolution enables profiling of glycans in glycoproteins. The applicability of the method was examined by applying it to other derivatives labeled with nonacidic tags such as ethyl p‐aminobenzoate‐ and 2‐aminoacridone‐labeled saccharides. 相似文献
14.
Shuntaro Matsuta Noriaki Shima Hidenao Kakehashi Akari Ishikawa Ryutaro Asai Atsushi Nitta Misato Wada Shihoko Nakano Hiroe Kamata Yoshio Nishiyama Hirohisa Nagatani Hisanori Imura Munehiro Katagi 《Journal of mass spectrometry : JMS》2020,55(9)
Various cathinone‐derived designer drugs (CATs) have recently appeared on the drug market. This study examined the mechanism for the generation of dehydrated ions for CATs during electrospray ionization collision‐induced dissociation (ESI‐CID). The generation mechanism of dehydrated ions is dependent on the amine classification in the cathinone skeleton, which is used in the identification of CATs. The two hydrogen atoms eliminated during the dehydration of cathinone (primary amine) and methcathinone (secondary amine) were determined, and the reaction mechanism was elucidated through the deuterium labeling experiments. The hydrogen atom bonded to the amine nitrogen was eliminated with the proton added during ESI, in both of the tested compounds. This provided evidence that CATs with tertiary amine structures (such as dimethylcathinone and α‐pyrrolidinophenones [α‐PPs]) do not undergo dehydration. However, it was shown that the two major tertiary amine metabolites (1‐OH and 2″‐oxo) of CATs generate dehydrated ions in ESI‐CID. The dehydration mechanisms of the metabolites of α‐pyrrolidinobutiophenone (α‐PBP) belongs to α‐PPs were also investigated. Stable‐isotope labeling showed the dehydration of the 1‐OH metabolite following a simple mechanism where the hydroxy group was eliminated together with the proton added during ESI. In contrast, the dehydration mechanism of the 2″‐oxo metabolite involved hydrogen atoms in three or more locations along with the carbonyl group oxygen, indicating that dehydration occurred via multiple mechanisms likely including the rearrangement reaction of hydrogen atoms. These findings presented herein indicate that the dehydrated ions in ESI‐CID can be used for the structural identification of CATs. 相似文献
15.
Masahito Sekiguchi Hiromichi Tanaka Noriaki Takami Akiya Ogawa Ilhyong Ryu Noboru Sonoda 《Heteroatom Chemistry》1991,2(3):427-430
The reduction of elemental selenium by samarium diiodide led to selective formation of selenolate anion species (Se2− and Se22−), the alkylation of which provided dialkyl selenides and diselenides, respectively, in excellent yields. 相似文献
16.
Funakawa Daiju Matsuzawa Yasumichi Sasaki Itaru Suzuki Akito Teranishi Noriaki 《Letters in Mathematical Physics》2020,110(9):2471-2490
Letters in Mathematical Physics - We study time operators for discrete-time quantum systems. Quantum walks are typical examples. We construct time operators for one-dimensional homogeneous quantum... 相似文献
17.
A new set of atomic radii for accurate estimation of solvation free energy by Poisson–Boltzmann solvent model
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Junya Yamagishi Noriaki Okimoto Gentaro Morimoto Makoto Taiji 《Journal of computational chemistry》2014,35(29):2132-2139
The Poisson–Boltzmann implicit solvent (PB) is widely used to estimate the solvation free energies of biomolecules in molecular simulations. An optimized set of atomic radii (PB radii) is an important parameter for PB calculations, which determines the distribution of dielectric constants around the solute. We here present new PB radii for the AMBER protein force field to accurately reproduce the solvation free energies obtained from explicit solvent simulations. The presented PB radii were optimized using results from explicit solvent simulations of the large systems. In addition, we discriminated PB radii for N‐ and C‐terminal residues from those for nonterminal residues. The performances using our PB radii showed high accuracy for the estimation of solvation free energies at the level of the molecular fragment. The obtained PB radii are effective for the detailed analysis of the solvation effects of biomolecules. © 2014 The Authors Journal of Computational Chemistry Published by Wiley Periodicals, Inc. 相似文献
18.
19.
Optical Review - A novel color removal method for digital color images is proposed. In this method, differences of colors in an input color image are reflected effectively, and the perceived... 相似文献
20.
Yoshiki Nakata Kunio Tsuchida Noriaki Miyanaga 《Optics and Lasers in Engineering》2009,47(7-8):847-849
Combined periodic structures composed of micron-sized periodic structure and nano-sized quasi periodic structure were generated on Ni–Ti target by multiple shots of interfering femtosecond laser beams. The micron-sized structure was generated by the interference pattern of four beams, and the nano-sized quasi period was generated due to the multiple shot effect of femtosecond laser. The structures were investigated in detail by two-dimensional fast Fourier transform (2D-FFT). The power spectra showed small spots and fuzzy spots due to precise period and quasi period, respectively. The most major size of the quasi periodic structure was 580 nm. 相似文献