Three Short Stories about Hexaarylbenzene–Porphyrin Scaffolds

A feasible two‐step synthesis and characterization of a full series of hexaarylbenzene (HAB) substituted porphyrins and tetrabenzoporphyrins is presented. Key steps represent the microwave‐assisted porphyrin condensation and the statistical Diels–Alder reaction to the desired HAB‐porphyrins. Regarding their applications, they proved to be easily accessible and effective high molecular mass calibrants for (MA)LDI mass spectrometry. The free‐base and zinc(II) porphyrin systems, as well as the respective tetrabenzoporphyrins, demonstrate in solid state experiments strong red‐ and near‐infrared‐light emission and are potentially interesting for the application in “truly organic” light‐emitting devices. Lastly, they represent facile precursors to large polycyclic aromatic hydrocarbon (PAH) substituted porphyrins. We prepared the first tetra‐hexa‐peri‐hexabenzocoronene substituted porphyrin, which represents the largest prepared PAH‐porphyrin conjugate to date.     

Pyridyl‐Endcapped Polyynes: Stabilized Wire‐like Molecules

A 4‐ethynylpyridyl derivative with sterically shielding phenyl groups in the 3‐ and 5‐positions has been synthesized and used to terminate a series of polyynes. This approach allows for the synthesis of stable polyynes up to an octayne, twice as long as previous accessible for “unstabilized” pyridyl‐endcapped polyynes. The potential of these polyynes as wire‐like linkers to metal centers is demonstrated by axial coordination of pyridyl groups to zinc‐ and ruthenium‐metalloporphyrins.     

Solid Separation from a Mixed Suspension through Electric‐Field‐Enhanced Crystallization

When applied to a pure component suspension in an apolar solvent, a strong inhomogeneous electric field induces particle movement, and the particles are collected at the surface of one of the two electrodes. This new phenomenon was used to separately isolate two organic crystalline compounds, phenazine and caffeine, from their suspension in 1,4‐dioxane. First, crystals of both compounds were collected at different electrodes under the influence of an electric field. Subsequent cooling crystallization enabled the immobilization and growth of the particles on the electrodes, which were separately collected after the experiment with purities greater than 91 %. This method can be further developed into a technique for crystal separation and recovery in complex multicomponent suspensions of industrial processes.     

Limiting the Number of Potential Binding Modes by Introducing Symmetry into Ligands: Structure‐Based Design of Inhibitors for Trypsin‐Like Serine Proteases

In the absence of X‐ray data, the exploration of compound binding modes continues to be a challenging task. For structure‐based design, specific features of active sites in different targets play a major role in rationalizing ligand binding characteristics. For example, dibasic compounds have been reported as potent inhibitors of various trypsin‐like serine proteases, the active sites of which contain several binding pockets that can be targeted by cationic moieties. This results in several possible orientations within the active site, complicating the binding mode prediction of such compounds by docking tools. Therefore, we introduced symmetry in bi‐ and tribasic compounds to reduce conformational space in docking calculations and to simplify binding mode selection by limiting the number of possible pocket occupations. Asymmetric bisbenzamidines were used as starting points for a multistage and structure‐guided optimization. A series of 24 final compounds with either two or three benzamidine substructures was ultimately synthesized and evaluated as inhibitors of five serine proteases, leading to potent symmetric inhibitors for the pharmaceutical drug targets matriptase, matriptase‐2, thrombin and factor Xa. This study underlines the relevance of ligand symmetry for chemical biology.     

An attempt to detect bicontinuity from SANS data

SANS is a powerful tool to characterise microemulsions, which can have a discontinuous droplet-like structure (oil in water (O/W), water in oil (W/O)) or a bicontinuous one. In the present study, we try to distinguish O/W, W/O and bicontinuous microemulsions by SANS measurements under practical conditions and by a certain evaluation technique. For this reason we chose the well characterised ternary system water-non-ionic surfactant (C(12)E(5))-oil (n-octane), at a fixed surfactant concentration and performed SANS measurements throughout its one-phase channel where droplet-like phases as well as bicontinuous phases are well established. We evaluated the scattering data via the 'Generalised Indirect Fourier Transformation' method (GIFT) which is based on a particulate picture. It should therefore give good results in the droplet domains while a poor fit could be expected for the bicontinuous regime. For comparison we also applied the model of Teubner and Strey (TS) which was developed especially for bicontinuous phases, here a bad fit can be expected for the particulate regime. The data evaluation via GIFT leads to relatively good fits throughout the one-phase channel. The results are physically meaningful and are comparable to those of the TS model. We show that the scattering pattern of a bicontinuous microemulsion can be represented by that of a polydisperse particulate system. This is in clear contradiction to the expectation that the particle picture used in the GIFT method must fail when the bicontinuous regime is reached.     

Influence of ionic charges on the bilayers of lamellar phases

The influence of ionic charges on the mesophases in the ternary system of C(12-16)E(6) (LA 070), ethylhexylglycerid (EHG), and water was studied. The charge was introduced by adding the ionic surfactant SDS (sodium dodecyl sulfate). The single lamellar phase (5 wt % LA 070 and 240 mM EHG in water) yields a bluish homogeneous solution. With the addition of SDS, the samples become more and more clear. Rheology measurements indicate that increased charge density increases the storage modulus G', and the lamellar phases show typical behavior of a viscoelastic fluid with a yield stress at higher SDS concentration. SAXS measurements show that the interlamellar distance D decreases with SDS concentration. The addition of ionic surfactants suppresses the Helfrich undulations, flattens the bilayers, and decreases interbilayer spacing due to electrostatic repulsions of the ionic surfactant head groups. Furthermore, the L(alpha) phase transforms into vesicle phases as the SDS concentration is increased. Second, it is shown that with added NaCl electrolyte the phase with charged surfactant behaves again in the same way as the initial uncharged system. The addition of salt screens the electrostatic interaction, which leads to a higher flexibility of the bilayers and a decrease of the storage modulus G'. Theoretical calculations show that the shear moduli of the L(alpha) phases are much smaller than the osmotic pressure of the systems. Several models are proposed for the explanation of the shear moduli. The model due to Lekkerkerker for the electric contribution of the bending constant of the bilayer seems to yield good results for the transition to vesicles.     

Two-dimensional electrophoresis of membrane proteins

One third of all genes of various organisms encode membrane proteins, emphasizing their crucial cellular role. However, due to their high hydrophobicity, membrane proteins demonstrate low solubility and a high tendency for aggregation. Indeed, conventional two-dimensional gel electrophoresis (2-DE), a powerful electrophoretic method for the separation of complex protein samples that applies isoelectric focusing (IEF) in the first dimension and sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) in the second dimension, has a strong bias against membrane proteins. This review describes two-dimensional electrophoretic techniques that can be used to separate membrane proteins. Alternative methods for performing conventional 2-DE are highlighted; these involve replacing the IEF with electrophoresis using cationic detergents, namely 16-benzyldimethyl-n-hexadecylammonium chloride (16-BAC) and cetyl trimethyl ammonium bromide (CTAB), or the anionic detergent SDS. Finally, the separation of native membrane protein complexes through the application of blue and clear native gel electrophoresis (BN/CN-PAGE) is reviewed, as well as the free-flow electrophoresis (FFE) of membranes.     

Synthesis of novel curcumin analogues and their evaluation as selective cyclooxygenase-1 (COX-1) inhibitors

Curcumin, a major yellow pigment and active component of turmeric, has been shown to possess anti-inflammatory and anti-cancer activities. Recent studies have indicated that cyclooxygenase-1 (COX-1) plays an important role in inflammation and carcinogenesis. In order to find more selective COX-1 inhibitors a series of novel curcumin derivatives was synthesized and evaluated for their ability to inhibit this enzyme using in vitro inhibition assays for COX-1 and COX-2 by measuring PGE(2) production. All curcumin analogues showed a higher rate of COX-1 inhibition. The most potent curcumin compounds were (1E,6E)-1,7-di-(2,3,4-trimethoxyphenyl)-1,6-heptadien-3,5-dione (4) (COX-1: IC(50) = 0.06 microM, COX-2: IC(50) > 100 microM, selectivity index>1666) and (1E,6E)-methyl 4-[7-(4-methoxycarbonyl)phenyl]-3,5-dioxo-1,6-heptadienyl]benzoate (6) (COX-1: IC(50) = 0.05 microM, COX-2: IC(50) > 100 microM, selectivity index > 2000). Curcumin analogues therefore represent a novel class of highly selective COX-1 inhibitors and promising candidates for in vivo studies.