Evaluating glycogen signal contamination in muscle by (13)C MRS of the liver

To evaluate the contamination of glycogen signal synthesized in skeletal muscle by that in the liver, long-term monitoring of over 7 h of in vivo [1-¹³C] glycogen synthesis/degradation at the right abdomen and left shoulder was achieved using a 3.0-T clinical MR system. ¹³C MR spectra without localization were obtained from five healthy volunteers before and after oral administration of 85 g of d-glucose, including 10 g of 99% [1-¹³C] glucose. In all volunteers, the relative signal intensities at the abdomen to those at shoulder were about two- to fivefold, and those of time-course changes at the abdomen and shoulder were dissimilar. It is considered that the quantity of muscle-synthesized glycogen signal at the abdomen is less than that at the shoulder because of the lesser muscle volume at the abdomen, and it may be less affected for evaluating glycogen synthesis/degradation in the liver even without localization pulses.     

SaxsMDView: a three‐dimensional graphics program for displaying force vectors

A new three‐dimensional graphics program, SaxsMDView, is described. The program performs a three‐dimensional graphical representation for protein molecules along with the force vector (or vector potential) applying to each atom. The displayed object can be rotated and translated in arbitrary directions by interactive mouse manipulation. While SaxsMDView was originally intended to visualize the result of SAXS_MD, a previously developed program based on the restrained molecular dynamics with small‐angle X‐ray scattering constraints, it can also be useful for graphical representation of other objects such as coarse‐grained molecular models reconstructed by ab initio modelling or solvent site‐dipole field vectors induced around the protein molecule. Some examples of the application of the program including the graphical analyses of the results with SAXS_MD are also presented.     

Structural instability of PbSe/SnSe superlattices under pressure

Abstract

PbSe/SnSe superlattice, phase transition, high pressure, SR x-ray diffraction)

Synchrotron x-ray diffraction experiments have revealed successive phase transitions in epitaxially-grown PbSe/SnSe superlattices. The transition pressures from the low-pressre cubic B1- to the high-pressure orthorhombic B16-type structures are observed to vary systematically depending upon thickness of the PbSe layer. For example, a [PbSe(36A)/SnSe(12A)]₁₉, with the B1 structure in both layers stabilized in its asgrown state, undergoes the [B1/B1]-to-[B1/B16] and [B1/B16]-to-[B16/B16] structural transitions at 1.9 and 3.8GPa, respectively. This result is in contrast to their bulk data that the B1-to-B16 transition takes place at 5.3GPa in PbSe while the B16 phase is stable in SnSe at atmospheric pressure.     

Photoswitching properties of photonic band gap material containing azo-polymer liquid crystal

A photochemically tunable photonic crystal was prepared by infiltration of the polymer liquid crystal (LC) having azo-chromophores in a SiO₂ inverse opal structure. The SiO₂ inverse opal film infiltrated with the polymer LC reflected a light corresponding to the periodicity as well as the refractive indices of the inverse opal structure. Linearly polarized light irradiation caused the shift of the reflection band to longer wavelength more than 15 nm. This is caused by the formation of uniaxially anisotropic molecular orientation of the polymer LC. The switched state was stable under interior light, and reversible switching of the reflection band can be achieved by the linearly and circularly polarized light irradiation. This photoswitching property will be suitable not only for various optical materials, but also for introduction of defects in the photonic crystals.     

High-performance liquid chromatographic assay of N(G)-monomethyl-L-arginine, N(G),N(G)-dimethyl-L-arginine, and N(G),N(G)'-dimethyl-L-arginine using 4-fluoro-7-nitro-2, 1,3-benzoxadiazole as a fluorescent reagent

N(G)-Monomethyl-L-arginine (L-NMMA), N(G),N(G)-dimethyl-L-arginine (ADMA), and N(G),N(G)'-dimethyl-L-arginine (SDMA) are emerging cardiovascular risk factors. A high-performance liquid chromatographic method with fluorescence detection for the simultaneous determination of L-NMMA, ADMA and SDMA is described. The assay employed 4-fluoro-7-nitro-2,1,3-benzoxadiazole (NBD-F) as a fluorescent derivatization reagent. After solid phase extraction with cation-exchange column, the methylated arginines were converted to fluorescent derivatives with NBD-F, and the derivatives were separated within 32 min on a reversed-phase column. Nomega-Propyl-L-arginine was Used as an internal standard. Extrapolated detection limits were 12 nM (12 fmol per injection) for L-NMMA and 20 nM (20 fmol per injection) for ADMA and SDMA, respectively, with a signal-to-noise ratio of 3. The calibration curves for L-NMMA, ADMA and SDMA were linear within the range of 50-5000 fmol. The method was applied to the quantitative determination of L-NMMA, ADMA and SDMA in 200 microl of rat plasma. The concentrations of L-NMMA, ADMA and SDMA in rat plasma were 0.16 +/- 0.03, 0.80 +/- 0.25 and 0.40 +/- 0.21 microM, respectively (n = 5).     

Photometric detection of cyclodextrins in liquid chromatography by using iodine generated electrochemically in-situ

A method has been developed for photometric detection of cyclodextrins (CD) in liquid chromatography using iodine (I₂) generated electrochemically in-situ. Iodide ion in the mobile phase was electrochemically oxidized to I₂ which was subsequently reacted with I^–, in an electrochemical flow cell, forming I₃^–. The absorbance of I₃^– was found to be greatly enhanced when CD were present in the mobile phase. The absorbance enhancement was caused by the change in the mole fraction of I₃^–, because of the inclusion reaction of I₃^– with CD. On the basis of this phenomenon, CD were detected by means of a photodiode-array UV–visible detector positioned downstream of the electrochemical flow cell. The signals were found to be linearly dependent on CD concentration. Because the formation constants of I₃^– with CD decrease in the order -CD>-CD>-CD, -CD was most detectable by the method. Detection limits were 1.0 mol L^–1 for -CD, 65 mol L^–1 for monoG1--CD, 100 mol L^–1 for -CD, and 200 mol L^–1 for -CD.     

A Facile Synthesis of 3,4-Diamino-2,5-Diacylthieno[2,3-b]Thiophenes from Disodium(Dimercaptomethylene)Malononitrile and α-Halo Ketones

Various kinds of α-halo ketones readily reacted with disodium (dimercaptomethylene)malononitrile to give the corresponding 34-diamino-2,5-diacylthieno-[2,3-b]thiophenes in good to excellent yields. The reaction was successfully extended to the synthesis of a thienothiophene derivative having two sydnone rings by using the 4-(bromoacetyl)sydnone.     

Rational Design of [13C,D14]Tert‐butylbenzene as a Scaffold Structure for Designing Long‐lived Hyperpolarized 13C Probes

Dynamic nuclear polarization (DNP) is a technique to polarize the nuclear spin population. As a result of the hyperpolarization, the NMR sensitivity of the nuclei in molecules can be dramatically enhanced. Recent application of the hyperpolarization technique has led to advances in biochemical and molecular studies. A major problem is the short lifetime of the polarized nuclear spin state. Generally, in solution, the polarized nuclear spin state decays to a thermal spin equilibrium, resulting in loss of the enhanced NMR signal. This decay is correlated directly with the spin‐lattice relaxation time T₁. Here we report [¹³C,D₁₄]tert‐butylbenzene as a new scaffold structure for designing hyperpolarized ¹³C probes. Thanks to the minimized spin‐lattice relaxation (T₁) pathways, its water‐soluble derivative showed a remarkably long ¹³C T₁ value and long retention of the hyperpolarized spin state.