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Weixun Wang Bernard K. Choi Wenyu Li Zhege Lao Anita Y. H. Lee Sandra C. Souza Nathan A. Yates Timothy Kowalski Alessandro Pocai Lucinda H. Cohen 《Journal of the American Society for Mass Spectrometry》2014,25(4):614-625
Stromal cell-derived factor 1α (SDF-1α) or CXCL12 is a small pro-inflammatory chemoattractant cytokine and a substrate of dipeptidyl peptidase IV (DPP-IV). Proteolytic cleavage by DPP-IV inactivates SDF-1α and attenuates its interaction with CXCR4, its cell surface receptor. To enable investigation of suppression of such inactivation with pharmacologic inhibition of DPP-IV, we developed quantitative mass spectrometric methods that differentiate intact SDF-1α from its inactive form. Using top-down strategy in quantification, we demonstrated the unique advantage of keeping SDF-1α’s two disulfide bridges intact in the analysis. To achieve the optimal sensitivity required for quantification of intact and truncated SDF-1α at endogenous levels in blood, we coupled nano-flow tandem mass spectrometry with antibody-based affinity enrichment. The assay has a quantitative range of 20 pmol/L to 20 nmol/L in human plasma as well as in rhesus monkey plasma. With only slight modification, the same assay can be used to quantify SDF-1α in mice. Using two in vivo animal studies as examples, we demonstrated that it was critical to differentiate intact SDF-1α from its truncated form in the analysis of biomarkers for pharmacologic inhibition of DPP-IV activity. These novel methods enable translational research on suppression of SDF-1 inactivation with DPP-IV inhibition and can be applied to relevant clinical samples in the future to yield new insights on change of SDF-1α levels in disease settings and in response to therapeutic interventions. Figure
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74.
Qian Li Christopher Batchelor-McAuley Nathan S. Lawrence Robert S. Hartshorne Charles J. V. Jones Richard G. Compton 《Journal of Solid State Electrochemistry》2014,18(5):1215-1221
In this work, a reticulated vitreous carbon electrode (RVCE, 96.5 % porosity, 24 cm?1) was modified with 2-anthraquinonyl groups to electrocatalytically reduce dissolved oxygen in neutral aqueous solution (0.1 M phosphate buffer solution supported with 3 M potassium chloride, pH of 6.7) to hydrogen peroxide (H2O2) at 25 °C under atmospheric pressure. The obtained current density was ca. 3 mA cm?2. For the first time, the oxygen reduction was investigated on a novelly designed RVCE housed in a gravity-feed flow system. Fractional current conversions obtained on the RVC flow cell were compared and contrasted with those on a two-dimensional electrode, viz. a tubular flow electrode. The modified-on catalyst has the benefit in terms of easy separation of the product from the catalyst. The in situ generated low concentration of H2O2 provides potential applications to water purification processes and disinfection for water and food. 相似文献
75.
Nathan P. Oien Luong T. Nguyen Dr. Finith E. Jernigan Prof. Melanie A. Priestman Prof. David S. Lawrence 《Angewandte Chemie (International ed. in English)》2014,53(15):3975-3978
In vivo optical imaging must contend with the limitations imposed by the optical window of tissue (600–1000 nm). Although a wide array of fluorophores are available that are visualized in the red and near‐IR region of the spectrum, with the exception of proteases, there are few long wavelength probes for enzymes. This situation poses a particular challenge for studying the intracellular biochemistry of erythrocytes, the high hemoglobin content of which optically obscures subcellular monitoring at wavelengths less than 600 nm. To address this, tunable fluorescent reporters for protein kinase activity were developed. The probing wavelength is preprogrammed by using readily available fluorophores, thereby enabling detection within the optical window of tissue, specifically in the far‐red and near‐IR region. These agents were used to monitor endogenous cAMP‐dependent protein kinase activity in erythrocyte lysates and in intact erythrocytes when using a light‐activatable reporter. 相似文献
76.
Probing the CH⋅⋅⋅π Weak Hydrogen Bond in Anesthetic Binding: The Sevoflurane–Benzene Cluster
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Nathan A. Seifert Dr. Daniel P. Zaleski Dr. Cristóbal Pérez Dr. Justin L. Neill Prof. Brooks H. Pate Montserrat Vallejo‐López Prof. Alberto Lesarri Dr. Emilio J. Cocinero Prof. Fernando Castaño Prof. Isabelle Kleiner 《Angewandte Chemie (International ed. in English)》2014,53(12):3210-3213
Cooperativity between weak hydrogen bonds can be revealed in molecular clusters isolated in the gas phase. Here we examine the structure, internal dynamics, and origin of the weak intermolecular forces between sevoflurane and a benzene molecule, using multi‐isotopic broadband rotational spectra. This heterodimer is held together by a primary C? H???π hydrogen bond, assisted by multiple weak C? H???F interactions. The multiple nonbonding forces hinder the internal rotation of benzene around the isopropyl C? H bond in sevoflurane, producing detectable quantum tunneling effects in the rotational spectrum. 相似文献
77.
David L. Mobley Shuai Liu Nathan M. Lim Karisa L. Wymer Alexander L. Perryman Stefano Forli Nanjie Deng Justin Su Kim Branson Arthur J. Olson 《Journal of computer-aided molecular design》2014,28(4):327-345
Here, we give an overview of the protein-ligand binding portion of the Statistical Assessment of Modeling of Proteins and Ligands 4 (SAMPL4) challenge, which focused on predicting binding of HIV integrase inhibitors in the catalytic core domain. The challenge encompassed three components—a small “virtual screening” challenge, a binding mode prediction component, and a small affinity prediction component. Here, we give summary results and statistics concerning the performance of all submissions at each of these challenges. Virtual screening was particularly challenging here in part because, in contrast to more typical virtual screening test sets, the inactive compounds were tested because they were thought to be likely binders, so only the very top predictions performed significantly better than random. Pose prediction was also quite challenging, in part because inhibitors in the set bind to three different sites, so even identifying the correct binding site was challenging. Still, the best methods managed low root mean squared deviation predictions in many cases. Here, we give an overview of results, highlight some features of methods which worked particularly well, and refer the interested reader to papers in this issue which describe specific submissions for additional details. 相似文献
78.
Mariana Pokrass Doron Azulay Isaac Balberg Nurit Atar Raz Gvishi Menachem Nathan 《Journal of Sol-Gel Science and Technology》2014,70(3):517-527
Electrical properties of multi-walled carbon nanotubes (MWNTs)/hybrid-glass nanocomposites prepared by the fast-sol–gel reaction were investigated in light of percolation theory. A good correlation was found between the experimental results and the theory. We obtained a percolation threshold ? c = 0.22 wt%, and a critical exponent of t = 1.73. These values are reported for the first time for a silica-based system. The highest conductivity measured on the MWNT/hybrid-glass nanocomposites was σ ≈ 10?3(Ω cm)?1 for 2 wt% carbon nanotube (CNT) loading. The electrical conductivity was at least 12 orders of magnitude higher than that of pure silica. Electrostatic force microscopy and conductive-mode atomic force microscopy studies demonstrated conductivity at the micro-level, which was attributed to the CNT dispersed in the matrix. It appears that the dispersion in our MWNT/hybrid-glass system yields a particularly low percolation threshold compared with that of a MWNT/silica-glass system. Materials with electrical conductivities described in this work can be exploited for anti-static coating. 相似文献
79.
Nathan J. Oldenhuis K. Peter Qin Shu Wang Hong-Zhou Ye Eric A. Alt Adam P. Willard Troy Van Voorhis Stephen L. Craig Prof. Jeremiah A. Johnson 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2020,132(7):2806-2814
Photoresponsive materials that change in response to light have been studied for a range of applications. These materials are often metastable during irradiation, returning to their pre-irradiated state after removal of the light source. Herein, we report a polymer gel comprising poly(ethylene glycol) star polymers linked by Cu24L24 metal–organic cages/polyhedra (MOCs) with coumarin ligands. In the presence of UV light, a photosensitizer, and a hydrogen donor, this “polyMOC” material can be reversibly switched between CuII, CuI, and Cu0. The instability of the MOC junctions in the CuI and Cu0 states leads to network disassembly, forming CuI/Cu0 solutions, respectively, that are stable until re-oxidation to CuII and supramolecular gelation. This reversible disassembly of the polyMOC network can occur in the presence of a fixed covalent second network generated in situ by copper-catalyzed azide-alkyne cycloaddition (CuAAC), providing interpenetrating supramolecular and covalent networks. 相似文献