Reproducible microwave-assisted acid hydrolysis of proteins using a household microwave oven and its combination with LC-ESI MS/MS for mapping protein sequences and modifications

A new set-up for microwave-assisted acid hydrolysis (MAAH) with high efficiency and reproducibility to degrade proteins into peptides for mass spectrometry analysis is described. It is based on the use of an inexpensive domestic microwave oven and can be used for low volume protein solution digestion. This set-up has been combined with liquid chromatography electrospray ionization quadrupole time-of-flight mass spectrometry (LC-ESI QTOF MS) for mapping protein sequences and characterizing phosphoproteins. It is demonstrated that for bovine serum albumin (BSA), with a molecular mass of about 67,000 Da, 1292 peptides (669 unique sequences) can be detected from a 2 μg hydrolysate generated by trifluoroacetic acid (TFA) MAAH. These peptides cover the entire protein sequence, allowing the identification of an amino acid substitution in a natural variant of BSA. It is shown that for a simple phosphoprotein containing one phosphoform, β-casein, direct analysis of the hydrolysate generates a comprehensive peptide map that can be used to identify all five known phosphorylation sites. For characterizing a complex phosphoprotein consisting of different phosphoforms with varying numbers of phosphate groups and/or phosphorylation sites, such as bovine α_s1-casein, immobilized metal-ion affinity chromatography (IMAC) is used to enrich the phosphopeptides from the hydrolysate, followed by LC-ESI MS analysis. The MS/MS data generated from the initial hydrolysate and the phosphopeptide-enriched fraction, in combination with MS analysis of the intact protein sample, allow us to reveal the presence of three different phosphoforms of bovine α_s1-casein and assign the phosphorylation sites to each phosphoform with high confidence.     

H2S-sensing properties of Pt-doped mesoporous indium oxide

Pt-doped mesoporous indium oxide (In₂O₃) has been successfully obtained by a simple and effective in situ nanocasting method. The resultant samples were characterized by XRD, FE-SEM, TEM, N₂ physisorption, XPS and EDX. The gas sensing properties for hydrogen sulfide (H₂S) of the Pt-doped mesoporous In₂O₃ specimens were also examined. The results exhibit those In₂O₃ specimens possess much higher response to H₂S even at low concentration of 2 ppm and a lower optimum working temperature of 150 °C. A possible mechanism was also provided to explain the improvement of the sensing properties.     

Redox Couple of DNA on Multiwalled Carbon Nanotube Modified Electrode

It has been envisioned that carbon nanotubes could promote electron‐transfer reactions when used as electrode materials in electrochemical cells. In the present study, calf thymus DNA was electrochemically oxidized at an electrode modified with multiwalled carbon nanotubes. The potentials for DNA oxidation at pH 7.0 were found to be 0.71 and 0.81 V versus SCE, corresponding to the oxidation of guanine and adenine residues, respectively. An initial oxidation of adenine was observed in the first scan, which was followed by a quasi‐reversible redox process of the oxidation product in the subsequent scans.     

An optical reflected device using a molecularly imprinted polymer film sensor

A novel and highly selective optical sensor with molecularly imprinted polymer (MIP) film was fabricated and investigated. The optical sensor head employing a medium finesse molecularly imprinted polymer film has been fabricated and characterised. A blank polymer and formaldehyde imprinted polymer were using methacrylic acid as the functional monomer and the ethylene glycol dimethacrylate as a crosslinker. The transduction mechanism is discussed based on the changes of optical intensity of molecularly imprinted polymer film acting as an optical reflected sensor. Template molecules, which diffused into MIP, could cause film density, and refractive index change, and then induce measurable optical reflective intensity shifts. Based on the reflective intensity shifts, an optical reflection detection of formaldehyde was achieved by illuminating MIP with a laser beam. For the same MIP, the reflective intensity shift was proportional to the amount of template molecule. This optical sensor, based on an artificial recognition system, demonstrates long-time stability and resistance to harsh chemical environments. As the research moves forward gradually, we establish the possibilities of quantitative analysis primly, setting the groundwork to the synthesis of the molecular imprinted optical fiber sensor. The techniques show good reproducibility and sensitivity and will be of significant interest to the MIPcommunity.     

Development of a sensitive monoclonalantibody-based enzyme-linked immunosorbent assay for the antimalaria active ingredient artemisinin in the Chinese herb Artemisia annua L.

Artemisinin is an endoperoxide sesquiterpene lactone isolated from the Chinese medicinal plant Artemisia annua L. It has been widely used in South-East Asia and Africa as an effective drug against sensitive and multidrug-resistant Plasmodium falciparum malaria. A monoclonal antibody (mAb), designated as 3H2, was generated with artesunate–bovine serum albumin conjugate as the immunogen. mAb 3H2 was used to develop a highly sensitive and specific indirect competitive enzyme-linked immunosorbent assay (icELISA) for artemisinin. The concentration of analyte producing 50% of inhibition (IC₅₀) and the working range of the icELISA were 1.3 and 0.2–5.8 ng/mL, respectively. The mAb 3H2 recognized the artemisinin analogs artesunate, dihydroartemisinin, and artemether with cross-reactivity of 650%, 57%, and 3%, respectively, but negligibly recognized deoxyartemisinin and the artemisinin precursors arteannuin B and artemisinic acid. The average recoveries of artemisinin fortified in A. annua samples at concentrations from 156 to 5,000 μg/g determined by icELISA ranged from 91% to 98%. The icELISA was applied for the determination of artemisinin in different wild A. annua samples and the results were confirmed by high-performance liquid chromatography (HPLC) analysis. The correlation coefficient (R ²) between the two assays was larger than 0.99, demonstrating a good agreement between the icELISA and HPLC results. This ELISA is suitable for quality assurance of A. annua L. materials. Figure  Artemisia annua plant and antimalarial drugs derived from artemisinin     

Empirical likelihood for balanced ranked-set sampled data

Ranked-set sampling (RSS) often provides more efficient inference than simple random sampling (SRS). In this article, we propose a systematic nonparametric technique, RSS-EL, for hypothesis testing and interval estimation with balanced RSS data using empirical likelihood (EL). We detail the approach for interval estimation and hypothesis testing in one-sample and two-sample problems and general estimating equations. In all three cases, RSS is shown to provide more efficient inference than SRS of the same size. Moreover, the RSS-EL method does not require any easily violated assumptions needed by existing rank-based nonparametric methods for RSS data, such as perfect ranking, identical ranking scheme in two groups, and location shift between two population distributions. The merit of the RSS-EL method is also demonstrated through simulation studies. This work was supported by National Natural Science Foundation of China (Grant No. 10871037)     

Search for lowest-energy fullerenes: C98 to C110

By combining the semiempirical density-functional based tight-binding optimization with density-functional theory single-point energy calculation at the PBE1PBE/6-311G level, we propose an efficient computational approach to determine lowest-energy structures of large-sized carbon fullerenes. Our studies show that C(92) (D(3): 28) and C(94) (C(2): 43) are the new leading candidates for the lowest-energy structures of C(92) and C(94). Moreover, for the first time, the lowest-energy structures of C(98)-C(110) are identified on the basis of the density-functional theory calculation. The lowest-energy isomers C(102) (C(1): 603) and C(108) (D(2): 1771) are readily isolated experimentally because they are much lower in energy than their other low-lying IPR isomers.     

The first structurally characterized nitrosyl heme thiolate model complex

The NO ligand in the formally {FeNO}6 compound [Fe(oep)(NO)(thiolate)] is bent, and does not impart a significant structural trans effect to the Fe-S bond.