New approach to oligonucleotide microarrays using zirconium phosphonate-modified surfaces

A new approach to oligonucleotide arrays is demonstrated that utilizes zirconium phosphonate-derivatized glass slides. The active slides are prepared by binding Zr(4+) to surfaces terminated with organophosphonate groups previously deposited using either Langmuir-Blodgett or self-assembled monolayer methods. Oligonucleotide probes modified with a terminal phosphate bind strongly to the active zirconium phosphonate monolayer, and arrays for detecting fluorescent targets have been prepared using commercial spotting and scanning instruments. Preferred binding to the surface of the terminal phosphate of the modified probes instead of the internal phosphate diester groups is demonstrated and shown to yield increased fluorescence intensity after hybridization with labeled targets. A significant decrease in background signal is achieved by treating the slides with bovine serum albumin after spotting and before hybridization. A further increase in fluorescence after hybridization is observed when using a poly-guanine spacer between the probe oligomer and the terminal phosphate. Combining these modifications, an intensity ratio of nearly 1000 is achieved when comparing 5'-phosphate-modified 33-mer probes with unmodified probes upon hybridization with fluorescent targets.     

Improvement of Drosophila acetylcholinesterase stability by elimination of a free cysteine

Background

Acetylcholinesterase is irreversibly inhibited by organophosphate and carbamate insecticides allowing its use for residue detection with biosensors. Drosophila acetylcholinesterase is the most sensitive enzyme known and has been improved by in vitro mutagenesis. However, it is not sufficiently stable for extensive utilization. It is a homodimer in which both subunits contain 8 cysteine residues. Six are involved in conserved intramolecular disulfide bridges and one is involved in an interchain disulfide bridge. The 8^th cysteine is not conserved and is present at position 290 as a free thiol pointing toward the center of the protein.

Results

The free cysteine has been mutated to valine and the resulting protein has been assayed for stability using various denaturing agents: temperature, urea, acetonitrile, freezing, proteases and spontaneous-denaturation at room temperature. It was found that the C290V mutation rendered the protein 1.1 to 2.7 fold more stable depending on the denaturing agent.

Conclusion

It seems that stabilization resulting from the cysteine to valine mutation originates from a decrease of thiol-disulfide interchanges and from an increase in the hydrophobicity of the buried side chain.     

Line frequency shift measurements by diode-laser spectroscopy for CH(3)D-Xe

The pressure-induced Xe shifting and broadening coefficients for five lines of 12CH(3)D in the nu(3) band near 7.5 microm have been measured using a tunable diode-laser spectrometer. The frequency shift was determined from the simultaneous record of the Xe-broadened line and the same line of pure CH(3)D at low pressure. Comparisons are made with the results of theoretical calculations based on a semiclassical model involving the atom-atom Lennard-Jones (LJ) potential.     

Reactions of cationic living poly(tert-butyl aziridine)

The cationic polymerization of N-tert-butyl aziridine (TBA) can be conducted in such a way that the rate of termination is much slower than the rate of propagation, thus permitting preparation of a corresponding polymer which is “temporarily living”. Reactions of N-methyl-N-tert-butyl aziridinium triflate (which is the model for the active species of the living polymer) with different nucleophiles show that, at room temperature, the aziridinium ring reacts almost instantaneously with nucleophiles to form the corresponding ring-opened product. Analogous reactions with the aziridinium end group of living poly-TBA lead to polymers with varying end groups such as hydroxy, ester, primary, secondary or tertiary amino, halogen, and others. End group analysis by means of 360-MHz ¹H-NMR nuclear magnetic resonance spectroscopy showed that the concentration of the end groups was in all cases equal to the concentration of the methyl head group, originating form the initiation reaction, if the terminating nucleophile was added five minutes after initiation (at 15°C). Under these conditions the polymerization is quantitative for initiator concentrations down to 0.01 mol L^?1.     

2D-NMR strategy dedicated to the analysis of weakly ordered,fully deuterated enantiomers in chiral liquid crystals

Methods for the assignment of the quadrupolar doublets in the deuterium NMR spectra of weakly ordered, perdeuterated or partially deuterated enantiomers dissolved in chiral liquid crystals are described which use robust 2D correlation NMR experiments. To overcome a lack of resolution in deuterium tilted Q-COSY 2D spectra in such materials, we propose and explore a correlation 2D sequence which is based on deuterium-carbon 2D correlation spectroscopy. The technique results in a (13)C-(2)H contour plot and allows the full resonance assignment of overcrowded deuterium 1D spectra using carbon-deuterium correlations. The (2)H autocorrelation and (13)C-(2)H correlation experiments are applied in the case of a racemic mixture of 2-ethylhexanoic acid-d(15) dissolved in a polypeptidic chiral oriented solvent. The performance and the limits of both techniques are presented and discussed. For the last step of the assignment procedure, we propose a simple method for obtaining two coherent sets of quadrupolar splittings, one for each enantiomer.     

Ultrafast energy migration in platinum(II) diimine complexes bearing pyrenylacetylide chromophores

The ultrafast excited-state dynamics of three structurally related platinum(II) complexes has been investigated using femtosecond transient absorption spectrometry in 2-methyltetrahydrofuran (MTHF). Previous work has shown that Pt(dbbpy)(C[triple bond]C-Ph)2 (dbbpy is 4,4'-di(tert-butyl)-2,2'-bipyridine and C[triple bond]C-Ph is ethynylbenzene) has a lowest metal-to-ligand charge transfer (3MLCT) excited state, while the multichromophoric Pt(dbbpy)(C[triple bond]C-pyrene)2 (CC-pyrene is 1-ethynylpyrene) contains the MLCT state, but possesses a lowest intraligand (3IL) excited state localized on one of the CC-pyrenyl units (Pomestchenko, I. E.; Luman, C. R.; Hissler, M.; Ziessel, R.; Castellano, F. N. Inorg. Chem. 2003, 42, 1394-96). trans-Pt(PBu3)2(C[triple bond]C-pyrene)2 serves as a model system that provides a good representation of the CC-pyrene-localized 3IL state in a Pt(II) complex lacking the MLCT excited state. Following 400 nm excitation, the formation of the 3MLCT excited state in Pt(dbbpy)(C[triple bond]C-Ph)2 is complete within 200 +/- 40 fs, and intersystem crossing to the 3IL excited state in trans-Pt(PBu3)2(C[triple bond]C-pyrene)2 occurs with a time constant of 5.4 +/- 0.2 ps. Selective excitation into the low-energy MLCT bands in Pt(dbbpy)(C[triple bond]C-pyrene)2 (lambda(ex) = 480 nm) leads to the formation of the 3IL excited state in 240 +/- 40 fs, suggesting ultrafast wire-like energy migration in this molecule. The kinetic data suggest that the presence of the MLCT states in Pt(dbbpy)(C[triple bond]C-pyrene)2 markedly accelerates the formation of the triplet state of the pendant pyrenylacetylide ligand. In essence, the triplet sensitization process is kinetically faster than pure intersystem crossing in trans-Pt(PBu3)2(CC-pyrene)2 as well as vibrational relaxation in the MLCT excited state of Pt(dbbpy)(C[triple bond]C-Ph)2. These results are potentially important for the design of chromophores intended to reach their lowest excited state on subpicosecond time scales and advocate the likelihood of wire-like behavior in triplet-triplet energy transfer.     

Phase reconstruction from reflectivity in uniform fiber Bragg gratings

We propose a method for phase, time-delay, and impulse-response reconstruction from spectral power reflectance or reflectivity and apply it to uniform fiber Bragg gratings. This method is based on causality conditions and uses Hilbert and Wiener-Lee transforms. Results show a good agreement between exact and reconstructed functions.     

Diode-laser measurements and calculations of N2-broadening coefficients in the ν7 band of ethylene

N₂-broadening coefficients have been measured for 41 lines of C₂H₄ at 173.2 K in the P, Q, and R branches of the ν₇ fundamental band near 10 μm, using a tunable diode-laser spectrometer. These lines were individually fitted with a Voigt and a Rautian profile in order to determine their collisional widths. The resulting broadening coefficients, as well as those previously measured at room temperature for 35 transitions, are compared with values calculated on the basis of a semiclassical model of interacting linear molecules, using an atom-atom Lennard-Jones potential in addition to the electrostatic contributions. An overall satisfactory agreement is obtained for all the results at room and low temperatures. Finally the temperature dependence of the broadening coefficients has been determined through the temperature exponent n, experimentally for the 23 common transitions as well as theoretically for all the studied transitions.     

Grafting of copolymer styrene maleic anhydride on poly(ethylene terephthalate) film by chemical reaction and by plasma method: Optimization of the grafting reaction using experimental design

This work deals with the chemical grafting of a styrene maleic anhydride copolymer on the surface of a previously hydrolyzed polyethylene terephthalate (PET) film 12 μm thick via covalent bond. Two different ways are studied. The first one involves an activation of the hydrolyzed PET by the triethylamine before the grafting step. In the second one, the copolymer reacts with the 4-dimethylaminopyridine in order to form maleinyl pyridinium salt which reacts with alcohol function of the hydrolyzed PET. Characterization and quantification of the grafting are performed by Fourier transform infrared spectroscopy. Factorial experiment designs are used to optimize the process and to estimate experimental parameters effects. The opportunity to associate the chemical process to a cold remote nitrogen plasma one is also examined.