Bifurcations of a creeping air–water flow in a conical container

This numerical study describes the eddy emergence and transformations in a slow steady axisymmetric air–water flow, driven by a rotating top disk in a vertical conical container. As water height \(H_{\mathrm{w}}\) and cone half-angle \(\beta \) vary, numerous flow metamorphoses occur. They are investigated for \(\beta =30^{\circ }, 45^{\circ }\), and \(60^{\circ }\). For small \(H_{\mathrm{w}}\), the air flow is multi-cellular with clockwise meridional circulation near the disk. The air flow becomes one cellular as \(H_{\mathrm{w}}\) exceeds a threshold depending on \(\beta \). For all \(\beta \), the water flow has an unbounded number of eddies whose size and strength diminish as the cone apex is approached. As the water level becomes close to the disk, the outmost water eddy with clockwise meridional circulation expands, reaches the interface, and induces a thin layer with anticlockwise circulation in the air. Then this layer expands and occupies the entire air domain. The physical reasons for the flow transformations are provided. The results are of fundamental interest and can be relevant for aerial bioreactors.     

All-silica nanofluidic devices for DNA-analysis fabricated by imprint of sol-gel silica with silicon stamp

We present a simple and cheap method for fabrication of silica nanofluidic devices for single-molecule studies. By imprinting sol-gel materials with a multi-level stamp comprising micro- and nanofeatures, channels of different depth are produced in a single process step. Calcination of the imprinted hybrid sol-gel material produces purely inorganic silica, which has very low autofluorescence and can be fusion bonded to a glass lid. Compared to top-down processing of fused silica or silicon substrates, imprint of sol-gel silica enables fabrication of high-quality nanofluidic devices without expensive high-vacuum lithography and etching techniques. The applicability of the fabricated device for single-molecule studies is demonstrated by measuring the extension of DNA molecules of different lengths confined in the nanochannels.     

Minimalist landscape model of glass relaxation

The relaxation behavior of glass is of great scientific and technological importance. However, prediction of glass relaxation behavior using direct first principles techniques is currently infeasible for realistic laboratory time scales. The enthalpy landscape approach has proven to be successful in overcoming this time scale constraint and providing insights into the fundamental physics governing glass transition and relaxation behavior. However, it is still too computationally intensive to calculate representative enthalpy landscapes for multicomponent glasses of industrial interest. It is thus interesting to consider a simplified enthalpy landscape that captures the essential features of glass relaxation and can be solved analytically. Here, we present the analytical solution for such a “minimalist landscape” model that is complicated enough to capture both primary (α$\alpha$) and secondary (β$\beta$) relaxation processes, yet simple enough to offer a closed-form solution. Using this minimalist landscape, we perform model calculations to illustrate the relative impact of activation barriers and entropy on glass relaxation behavior. The results of our model show that α$\alpha$ and β$\beta$ relaxation processes are largely decoupled, in agreement with recently published experimental results.     

Theoretical study of the triplet excited state of PtPOP and the exciplexes M-PtPOP (M = Tl, Ag) in solution and comparison with ultrafast X-ray scattering results

The [Pt₂(H₂P₂O₅)₄]⁴⁻ ions in the ground and excited states and the excited-state complexes M-[Pt₂(H₂P₂O₅)₄]³⁻ and M₂-[Pt₂(H₂P₂O₅)₄]²⁻ (M = Ag, Tl) were studied in solution with various density functional theory (DFT) functionals from Gaussian 09 and Amsterdam Density Functional (ADF) programs. Calculated results were compared with ultrafast X-ray solution scattering data. Time dependent DFT (TD-DFT) calculations with the B3PW91 functional and unrestricted open shell calculations with the mPBE functional produce good agreement with the experimental results. Compared to gas phase calculations, the surrounding solvent is found to play an important role to shorten the Pt-Pt and M-Pt (M = Ag, Tl) bond lengths, lowering the molecular orbital energies and influences the molecular orbital transitions upon excitation, which stabilizes the excited transient molecules in solution.     

A comparison of NCO and NCA transfer methods for biological solid-state NMR spectroscopy

Three different techniques (adiabatic passage Hartman-Hahn cross-polarization, optimal control designed pulses, and EXPORT) are compared for transferring (15)N magnetization to (13)C in solid-state NMR experiments under magic-angle-spinning conditions. We demonstrate that, in comparison to adiabatic passage Hartman-Hahn cross-polarization, optimal control transfer pulses achieve similar or better transfer efficiencies for uniformly-(13)C,(15)N labeled samples and are generally superior for samples with non-uniform labeling schemes (such as 1,3- and 2-(13)C glycerol labeling). In addition, the optimal control pulses typically use substantially lower average RF field strengths and are more robust with respect to experimental variation and RF inhomogeneity. Consequently, they are better suited for demanding samples.     

̀Spatial impulse response of a rectangular double curved transducer

Calculation of the pressure field from transducers with both a convex and a concave surface geometry is a complicated assignment that often is accomplished by subdividing the transducer surface into smaller flat elements of which the spatial impulse response is known. This method is often applied to curved transducers because an analytical solution is unknown. In this work a semi-analytical algorithm for the exact solution to a first order in diffraction effect of the spatial impulse response of rectangular-shaped double curved transducers is presented. The solution and an approximation to it are investigated. The approximation reformulates the solution to an analytically integrable expression, which is computationally efficient to solve. Simulation results are compared to FIELD II simulations. Calculating the response from 200 different points yields a mean error for the different approximations ranging from 0.03% to 0.8% relative to a numerical solution for the spatial impulse response. It is also shown that the presented algorithm gives consistent results with FIELD II for a linear flat, a linear focused, and a convex nonfocused element. The solution involved a three-point Taylor expansion and gave an accuracy of 0.01%.     

Positronium formation at low temperatures: the role of trapped electrons

Measurements have been carried out of electron spin densities (by electron spin resonance technique) and positronium (Ps) formation probability as functions of Co-60 γ-irradiation dose in poly(methyl methacrylate) and linear poly(ethylene) at 77 K. We observe a linear relationship between the enhancement of the Ps formation and the density of trapped electrons in both polymers. This clear correlation strongly supports the previous suggestion by the authors that the increase in Ps formation with time (that has been observed at low temperatures for a number of polymers) can be explained as a reaction of free positrons with trapped electrons produced by the previously injected positrons.     

Point vortex models of bluff body wakes

Periodic point vortex configurations can be used as reduced-order models of vorticity-dominated wakes behind bluff bodies. The staggered Kármán street is considered the canonical representation of these vortex wakes. However, the streamline topology of this configuration is structurally unstable. Slight variations in the intervortex separations cause fluid to wind through the street, which has implications for transport and mixing in vortex wakes. (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Detection and Characterization of a Novel Copper-Dependent Intermediate in a Lytic Polysaccharide Monooxygenase

Lytic polysaccharide monooxygenases (LPMOs) are copper-containing enzymes capable of oxidizing crystalline cellulose which have large practical application in the process of refining biomass. The catalytic mechanism of LPMOs still remains debated despite several proposed reaction mechanisms. Here, we report a long-lived intermediate (t_1/2=6–8 minutes) observed in an LPMO from Thermoascus aurantiacus (TaLPMO9A). The intermediate with a strong absorption around 420 nm is formed when reduced LPMO-Cu^I reacts with sub-equimolar amounts of H₂O₂. UV/Vis absorption spectroscopy, electron paramagnetic resonance, resonance Raman and stopped-flow spectroscopy suggest that the observed long-lived intermediate involves the copper center and a nearby tyrosine (Tyr175). Additionally, activity assays in the presence of sub-equimolar amounts of H₂O₂ showed an increase in the LPMO oxidation of phosphoric acid swollen cellulose. Accordingly, this suggests that the long-lived copper-dependent intermediate could be part of the catalytic mechanism for LPMOs. The observed intermediate offers a new perspective into the oxidative reaction mechanism of TaLPMO9A and hence for the biomass oxidation and the reactivity of copper in biological systems.