Manganese detection in marine sediments: anodic vs. cathodic stripping voltammetry

Three different electroanalytical techniques for the detection of manganese in marine sediments are evaluated. The anodic stripping voltammetry of manganese at an in situ bismuth-film-modified boron-doped diamond electrode and cathodic stripping voltammetry at a carbon paste electrode are shown to lack the required sensitivity and reproducibility whereas cathodic stripping voltammetry at a bare boron-doped diamond electrode is shown to be reliable and selective with a limit of detection, from applying a 60 s accumulation period of 7.4 × 10⁻⁷ M and a sensitivity of 0.24 A M⁻¹. The method was used to evaluate the manganese content of marine sediments taken from Šibenik, Croatia.     

Complexation of plutonium(IV) with sulfate at variable temperatures

The complexation of plutonium(IV) with sulfate at variable temperatures has been investigated by solvent extraction method. A NaBrO₃ solution was used as holding oxidant to maintain the plutonium(IV) oxidation state throughout the experiments. The distribution ratio of Pu(IV) between the organic and aqueous phases was found to decrease as the concentrations of sulfate were increased. Stability constants of the 1:1 and 1:2 Pu(IV)-HSO₄ ⁻ complexes, dominant in the aqueous phase, were calculated from the effect of [HSO₄ ⁻] on the distribution ratio. The enthalpy and entropy of complexation were calculated from the stability constants at different temperatures using the Van’t Hoff equation.     

Kinetics and mechanism of the oxidation of iron(II) ion by chlorine dioxide in aqueous solution

The mechanism by which an excess of iron(II) ion reacts with aqueous chlorine dioxide to produce iron(III) ion and chloride ion has been determined. The reaction proceeds via the formation of chlorite ion, which in turn reacts with additional iron(II) to produce the observed products. The first step of the process, the reduction of chlorine dioxide to chlorite ion, is fast compared to the subsequent reduction of chlorite by iron(II). The overall stoichiometry is The rate is independent of pH over the range from 3.5 to 7.5, but the reaction is assisted by the presence of acetate ion. Thus the rate law is given by At an ionic strength of 2.0 M and at 25°C, k_u = (3.9 ± 0.1) × 10³ L mol^?1 s^?1 and k_c = (6 ± 1) × 10⁴ L mol^?1 s^?1. The formation constant for the acetatoiron(II) complex, K_f, at an ionic strength of 2.0 M and 25°C was found to be (4.8 ± 0.8) × 10^?2 L mol^?1. The activation parameters for the reaction were determined and compared to those for iron(II) ion reacting directly with chlorite ion. At 0.1 M ionic strength, the activation parameters for the two reactions were found to be identical within experimental error. The values of ΔH? and ΔS? are 64 ± 3 kJ mol^?1 and + 40 ± 10 J K^?1 mol^?1 respectively. © 2004 Wiley Periodicals, Inc. Int J Chem Kinet 36: 554–565, 2004     

Crystal orientation-ordered ZnS nanowire bundles

We report a novel approach for growing aligned and orientation-ordered ZnS nanowires. Our method relies on a buffer layer of CdSe grown on a Si(111) substrate, on which ZnS nanowires are grown. The growth process of the nanowire bundles is presented. The technique demonstrated could be an effective pathway for growing patterned, aligned, size-controlled, and orientation-ordered ZnS nanowires.     

Formalising the Pathways to Life Using Assembly Spaces

Assembly theory (referred to in prior works as pathway assembly) has been developed to explore the extrinsic information required to distinguish a given object from a random ensemble. In prior work, we explored the key concepts relating to deconstructing an object into its irreducible parts and then evaluating the minimum number of steps required to rebuild it, allowing for the reuse of constructed sub-objects. We have also explored the application of this approach to molecules, as molecular assembly, and how molecular assembly can be inferred experimentally and used for life detection. In this article, we formalise the core assembly concepts mathematically in terms of assembly spaces and related concepts and determine bounds on the assembly index. We explore examples of constructing assembly spaces for mathematical and physical objects and propose that objects with a high assembly index can be uniquely identified as those that must have been produced using directed biological or technological processes rather than purely random processes, thereby defining a new scale of aliveness. We think this approach is needed to help identify the new physical and chemical laws needed to understand what life is, by quantifying what life does.     

Modeling binaural loudness

A survey of data on the perception of binaurally presented sounds indicates that loudness summation across ears is less than perfect; a diotic sound is less than twice as loud as the same sound presented monaurally. The loudness model proposed by Moore et al. [J. Audio Eng. Soc. 45, 224-240 (1997)] determines the loudness of binaural stimuli by a simple summation of loudness across ears. It is described here how the model can be modified so as to give more accurate predictions of the loudness of binaurally presented sounds, including cases where the sounds at the two ears differ in level, frequency or both. The modification is based on the idea that there are inhibitory interactions between the internal representations of the signals at the two ears, such that a signal at the left ear inhibits (reduces) the loudness evoked by a signal at the right ear, and vice versa. The inhibition is assumed to spread across frequency channels. The modified model gives reasonably accurate predictions of a variety of data on the loudness of binaural stimuli, including data obtained using loudness scaling and loudness matching procedures.     

Polymer Intermediates and Polymers Derived from 5-t-Butyl-m-Xylene

Abstract

A series of condensation polymer intermediates, which included several new compositions, was prepared from 5-t-butyl-m-xylene (I) so that the effect of the bulky t-butyl group on polymer properties could be determined. Compound (I) was oxidized with nitric acid to obtain 5-t-butyl-isophthalic acid (II), which was converted successively to the diacid chloride, the diamide, the dinitrile, and finally to 5-t-butyl-m-xylene-α,α′-diamine (VI); the overall yield was 80%. The dimethyl ester of (II) was prepared and converted to 5-t-butyl-m-xylene-α,α′-diol (VIII), a new composition, in 79.5% overall yield; the diphenyl ester was also prepared. The sodium salt of (II) was catalytically reduced to obtain 5-t-butyl-1,3-cyclohexanedicarboxylic acid (IIa) in 95% yield. (IIa) was converted successively to the diacid chloride, the diamide, the dinitrile, and finally to 5-t-butyl-1,3-cyclohexanebis(methylamine) (VIa), a new composition; the overall yield was 37%. (IIa) was also converted to the dimethyl ester and finally to 5-t-butyl-1,3-cyclohexanedimethanol (VIIIa), a new composition; the overall yield was 64%. Condensation polymers were prepared from the intermediates (II), (IIa), (VI), (VIa), (VIII), and (VIIIa). These polymers had higher glass transition temperatures (T_g) than corresponding polymers containing no t-butyl groups. This general effect of the t-butyl group to increase the T_g value of the polymer was noted in all polymers prepared, regardless of whether the intermediate carrying the t-butyl group was a diacid, a diol, or a diamine, or whether the polymer was a polyamide, a polyester, or a polyurethane.     

Pyridyl-, bipyridyl-, and terpyridyl-functionalised azamacrocycles

Abstract

A series of azamacrocycles which have been N-functionalised with pendent pyridylmethyl-(pyCH₂-), bipyridylmethyl-(bipyCH₂-) and terpyridylmethyl- (terpyCH₂-) arms have been synthesised and characterised, and some of their coordination chemistry with transition metal ions is reported. By attaching the pendent-arms at the 5- rather than the 6-position of the py, bipy and terpy, new ligands are generated which can be used to form polynuclear metal complexes in a controlled and systematic fashion. Fluorescent pH and transition metal ion sensors have been developed by reacting the azamacrocyclic N-pendent bipyCH₂ arm(s) with cis-[Ru(bipy)₂Cl₂], to give macrocycles with up to four attached [Ru(bipy)₃]²⁺ groups. That based on 1,4,7-triazacyclononane (9N3), with three attached [Ru(bipy)₃]²⁺ groups, has a first photo excited state pK_a of 7.1, and is a useful fluorescent sensor for physiological pH at below micromolar concentrations. The analogous derivative of cyclam (1,4,8,11-tetraazacyclotetradecane) carrying four [Ru(bipy)₃]²⁺ groups has a first photo excited state pK_a of 5.7, allowing kinetic and thermodynamic fluorescence studies of metal ion uptake by an azamacrocycle at neutral pH without complications from protonated species. A pre-organised hexadentate tris(2,2′-bipyridyl) chelating ligand, 1,4,7-tris(2′,2″-bipyridyl-5′-ylmethyl)-1,4,7-triazacyclononane (L) has been developed, and crystal structures of mononuclear complexes [M(LH)]³⁺ (M = Ru, Cu) are reported. In [M(LH)]³⁺ the azamacrocyclic N-atoms are non-coordinating to M, but have a very high affinity for a single proton trapped in the macrocyclic cavity. An analogous and potentially nonadentate ligand has been developed based on 9N3 with three N-pendent terpyCH₂-arms.     

High–quality protein backbone reconstruction from alpha carbons using Gaussian mixture models

Coarse‐grained protein structure models offer increased efficiency in structural modeling, but these must be coupled with fast and accurate methods to revert to a full‐atom structure. Here, we present a novel algorithm to reconstruct mainchain models from C traces. This has been parameterized by fitting Gaussian mixture models (GMMs) to short backbone fragments centered on idealized peptide bonds. The method we have developed is statistically significantly more accurate than several competing methods, both in terms of RMSD values and dihedral angle differences. The method produced Ramachandran dihedral angle distributions that are closer to that observed in real proteins and better Phaser molecular replacement log‐likelihood gains. Amino acid residue sidechain reconstruction accuracy using SCWRL4 was found to be statistically significantly correlated to backbone reconstruction accuracy. Finally, the PD2 method was found to produce significantly lower energy full‐atom models using Rosetta which has implications for multiscale protein modeling using coarse‐grained models. A webserver and C++ source code is freely available for noncommercial use from: http://www.sbg.bio.ic.ac.uk/phyre2/PD2_ca2main/ . © 2013 Wiley Periodicals, Inc.     

S‐Alkylation of Soft Scorpionates

The alkylation reactions of soft scorpionates are reported. The hydrotris(S‐alkyl‐methimazolyl)borate dications (alkyl=methyl, allyl, benzyl), which were prepared by the reaction of Tm^Me anion and primary alkyl halides, have been isolated and structurally characterised. The reaction is, however, not universally successful. DFT analysis of these alkylation reactions (C?S versus B? H alkylation) indicates that the observed outcome is driven by kinetic factors. Extending the study to incorporate alternative imine thiones (mercaptobenzothiazole, bz; thiazoline, tz) led to the structural characterisation of di[aquo‐μ‐aquohydrotris(mercaptobenzothiazolyl)boratosodium], which contains sodium atoms in the κ³‐S,S,S coordination mode. Alkylation of Na[Tbz] and Na[tzTtz] leads to decomposition resulting in the formation of the simple S‐alkylated heterocycles. The analysis of the species involved in these reactions shows an inherent weakness in the B? N bond in soft scorpionates, which has implications for their use in more advanced chemistry.