Ionic aggregation in random copolymers containing phosphonium ionic liquid monomers

Copolymers of n‐butyl acrylate and phosphonium ionic liquid monomers possessing various alkyl substituents and counterions were synthesized through a combination of conventional free radical copolymerization and anion exchange. Differential scanning calorimetry and dynamic mechanical analysis provided the thermal and mechanical properties of these phosphonium cation‐containing random copolymers. Factors including alkyl chain length of phosphonium substituents, counterion type, as well as ionic concentration significantly influenced the association of phosphonium cations. Phosphonium ionomers with trialkyl substituents on phosphonium cations did not display the characteristic small‐angle X‐ray scattering peak, suggesting the absence of ionic clusters. However, low q peaks in wide‐angle X‐ray diffraction was indicative of significant concentration fluctuations wherein the ionic monomeric units associated. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Polymer Intermediates and Polymers Derived from 5-t-Butyl-m-Xylene

Abstract

A series of condensation polymer intermediates, which included several new compositions, was prepared from 5-t-butyl-m-xylene (I) so that the effect of the bulky t-butyl group on polymer properties could be determined. Compound (I) was oxidized with nitric acid to obtain 5-t-butyl-isophthalic acid (II), which was converted successively to the diacid chloride, the diamide, the dinitrile, and finally to 5-t-butyl-m-xylene-α,α′-diamine (VI); the overall yield was 80%. The dimethyl ester of (II) was prepared and converted to 5-t-butyl-m-xylene-α,α′-diol (VIII), a new composition, in 79.5% overall yield; the diphenyl ester was also prepared. The sodium salt of (II) was catalytically reduced to obtain 5-t-butyl-1,3-cyclohexanedicarboxylic acid (IIa) in 95% yield. (IIa) was converted successively to the diacid chloride, the diamide, the dinitrile, and finally to 5-t-butyl-1,3-cyclohexanebis(methylamine) (VIa), a new composition; the overall yield was 37%. (IIa) was also converted to the dimethyl ester and finally to 5-t-butyl-1,3-cyclohexanedimethanol (VIIIa), a new composition; the overall yield was 64%. Condensation polymers were prepared from the intermediates (II), (IIa), (VI), (VIa), (VIII), and (VIIIa). These polymers had higher glass transition temperatures (T_g) than corresponding polymers containing no t-butyl groups. This general effect of the t-butyl group to increase the T_g value of the polymer was noted in all polymers prepared, regardless of whether the intermediate carrying the t-butyl group was a diacid, a diol, or a diamine, or whether the polymer was a polyamide, a polyester, or a polyurethane.     

Pyridyl-, bipyridyl-, and terpyridyl-functionalised azamacrocycles

Abstract

A series of azamacrocycles which have been N-functionalised with pendent pyridylmethyl-(pyCH₂-), bipyridylmethyl-(bipyCH₂-) and terpyridylmethyl- (terpyCH₂-) arms have been synthesised and characterised, and some of their coordination chemistry with transition metal ions is reported. By attaching the pendent-arms at the 5- rather than the 6-position of the py, bipy and terpy, new ligands are generated which can be used to form polynuclear metal complexes in a controlled and systematic fashion. Fluorescent pH and transition metal ion sensors have been developed by reacting the azamacrocyclic N-pendent bipyCH₂ arm(s) with cis-[Ru(bipy)₂Cl₂], to give macrocycles with up to four attached [Ru(bipy)₃]²⁺ groups. That based on 1,4,7-triazacyclononane (9N3), with three attached [Ru(bipy)₃]²⁺ groups, has a first photo excited state pK_a of 7.1, and is a useful fluorescent sensor for physiological pH at below micromolar concentrations. The analogous derivative of cyclam (1,4,8,11-tetraazacyclotetradecane) carrying four [Ru(bipy)₃]²⁺ groups has a first photo excited state pK_a of 5.7, allowing kinetic and thermodynamic fluorescence studies of metal ion uptake by an azamacrocycle at neutral pH without complications from protonated species. A pre-organised hexadentate tris(2,2′-bipyridyl) chelating ligand, 1,4,7-tris(2′,2″-bipyridyl-5′-ylmethyl)-1,4,7-triazacyclononane (L) has been developed, and crystal structures of mononuclear complexes [M(LH)]³⁺ (M = Ru, Cu) are reported. In [M(LH)]³⁺ the azamacrocyclic N-atoms are non-coordinating to M, but have a very high affinity for a single proton trapped in the macrocyclic cavity. An analogous and potentially nonadentate ligand has been developed based on 9N3 with three N-pendent terpyCH₂-arms.     

High–quality protein backbone reconstruction from alpha carbons using Gaussian mixture models

Coarse‐grained protein structure models offer increased efficiency in structural modeling, but these must be coupled with fast and accurate methods to revert to a full‐atom structure. Here, we present a novel algorithm to reconstruct mainchain models from C traces. This has been parameterized by fitting Gaussian mixture models (GMMs) to short backbone fragments centered on idealized peptide bonds. The method we have developed is statistically significantly more accurate than several competing methods, both in terms of RMSD values and dihedral angle differences. The method produced Ramachandran dihedral angle distributions that are closer to that observed in real proteins and better Phaser molecular replacement log‐likelihood gains. Amino acid residue sidechain reconstruction accuracy using SCWRL4 was found to be statistically significantly correlated to backbone reconstruction accuracy. Finally, the PD2 method was found to produce significantly lower energy full‐atom models using Rosetta which has implications for multiscale protein modeling using coarse‐grained models. A webserver and C++ source code is freely available for noncommercial use from: http://www.sbg.bio.ic.ac.uk/phyre2/PD2_ca2main/ . © 2013 Wiley Periodicals, Inc.     

S‐Alkylation of Soft Scorpionates

The alkylation reactions of soft scorpionates are reported. The hydrotris(S‐alkyl‐methimazolyl)borate dications (alkyl=methyl, allyl, benzyl), which were prepared by the reaction of Tm^Me anion and primary alkyl halides, have been isolated and structurally characterised. The reaction is, however, not universally successful. DFT analysis of these alkylation reactions (C?S versus B? H alkylation) indicates that the observed outcome is driven by kinetic factors. Extending the study to incorporate alternative imine thiones (mercaptobenzothiazole, bz; thiazoline, tz) led to the structural characterisation of di[aquo‐μ‐aquohydrotris(mercaptobenzothiazolyl)boratosodium], which contains sodium atoms in the κ³‐S,S,S coordination mode. Alkylation of Na[Tbz] and Na[tzTtz] leads to decomposition resulting in the formation of the simple S‐alkylated heterocycles. The analysis of the species involved in these reactions shows an inherent weakness in the B? N bond in soft scorpionates, which has implications for their use in more advanced chemistry.     

Ion chromatograph with three-dimensional printed absorbance detector for indirect ultraviolet absorbance detection of phosphate in effluent and natural waters

An ion chromatography system employing a low-cost three-dimensional printed absorbance detector for indirect ultraviolet detection towards portable phosphate analysis of environmental and industrial waters has been developed. The optical detection cell was fabricated using stereolithography three-dimensional printing of nanocomposite material. Chromatographic analysis and detection of phosphate were carried out using a CS5A 4 × 250 mm analytical column with indirect ultraviolet detection using a 255 nm light-emitting diode. Isocratic elution using a 0.6 mM potassium phthalate eluent combined with 1.44 mM sodium bicarbonate was employed at a flow rate of 0.75 mL/min. A linear calibration range of 0.5 to 30 mg/L PO₄³⁻ applicable to environmental and wastewater analysis was achieved. For retention time and peak area repeatability, relative standard deviation values were 0.68 and 4.09%, respectively. Environmental and wastewater samples were analyzed with the optimized ion chromatography platform and the results were compared to values obtained by an accredited ion chromatograph. For the analysis of environmental samples, relative errors of <14 % were achieved. Recovery analysis was also carried out on both freshwater and wastewater samples and recovery results were within the acceptable range for water analysis using standard ion chromatography methods.