Three-dimensional structure of Saccharomyces cerevisiae inorganic pyrophosphatase complexed with cobalt and phosphate ions

Crystals of Saccharomyces cerevisiae inorganic pyrophosphatase suitable for X-ray diffraction study were grown by cocrystallization of the enzyme with cobalt chloride and imidodiphosphate. Saccharomyces cerevisiae is a metal-dependent enzyme which catalyzes hydrolysis of inorganic pyrophosphate to orthophosphate. The three-dimensional structure of this enzyme was solved by the molecular-replacement method and refined at 1.8 Å resolution to an R factor of 19.5%. Cobalt and phosphate ions were revealed in the active centers of both identical subunits (A and B) of the pyrophosphatase molecule. In subunit B, a water molecule was found between two cobalt ions. It is believed that this water molecule acts as an attacking nucleophile in the enzymatic cleavage of the pyrophosphate bond. It was demonstrated that cobalt ions and a phosphate group occupy only part of the potential binding sites (two chemically identical and crystallographically independent subunits have different binding sites). The arrangement of ligands and the structure of the nucleophile-binding site are discussed in relation to the mechanism of action of the enzyme and the nature of the metal activator.     

Vector coupled-wave method for analyzing diffraction by multilayer gratings

In the framework of the matrix formulation of the coupled plane wave approach, a method is proposed for increasing the stability of the numerical analysis of vector electromagnetic fields in periodic structures, including dielectric and metallic anisotropic layers and relief boundaries.     

Dynamic interaction of plasma flow with the hot boundary layer of a geomagnetic trap

The study of the interaction between collisionless plasma flow and stagnant plasma revealed the presence of an outer boundary layer at the border of a geomagnetic trap, where the super-Alfvén subsonic laminar flow changes over to the dynamic regime characterized by the formation of accelerated magnetosonic jets and decelerated Alfvén flows with characteristic relaxation times of 10–20 min. The nonlinear interaction of fluctuations in the initial flow with the waves reflected from an obstacle explains the observed flow chaotization. The Cherenkov resonance of the magnetosonic jet with the fluctuation beats between the boundary layer and the incoming flow is the possible mechanism of its formation. In the flow reference system, the incoming particles are accelerated by the electric fields at the border of boundary layer that arise self-consistently as a result of the preceding wave-particle interactions; the inertial drift of the incoming ions in a transverse electric field increasing toward the border explains quantitatively the observed ion acceleration. The magnetosonic jets may carry away downstream up to a half of the unperturbed flow momentum, and their dynamic pressure is an order of magnitude higher than the magnetic pressure at the obstacle border. The appearance of nonequilibrium jets and the boundary-layer fluctuations are synchronized by the magnetosonic oscillations of the incoming flow at frequencies of 1–2 mHz.     

Features of the Quenching of the Triplet States of Water-Soluble Porphyrins by Molecular Oxygen

Using the methods of time-resolved absorption spectroscopy, we have investigated the features of quenching, by molecular oxygen, of the excited triplet states of water-soluble 5,10,15,20-tetrakis-(4-N-methylpyridyl)-porphyrin (H₂TMPyP) and 5,10,15,20-tetrakis-(4-sulfonatophenyl)-porphyrin (H₂TSPP) in water–ethanol solutions. It has been revealed that for both compounds the rate constant of quenching of the triplet states increases with increasing viscosity of the medium. Quenching of the excited triplet states of the dissociated (in water) and undissociated (in ethanol) forms of water-soluble porphyrins occurs with a different efficiency, and the rate constant of quenching the triplet states by molecular oxygen k _T thereby is higher for the dissociated form. It has been shown by means of mathematical modeling that the experimental results obtained can be described in terms of the change in the rate constants of intracomplex transitions in the porphyrin–oxygen collisional complex at varied solution viscosity and their difference for the dissociated and undissociated forms of water-soluble porphyrin.     

Energetics of an adiabatically-loaded excited anharmonic oscillator

The dependence of the energy characteristics on an adiabatically slowly increasing external force is determined analytically for an anharmonic oscillator. The analytical results are confirmed by a numerical calculation. The nature of the force dependences of the energy characteristics are determined and discussed. Fiz. Tverd. Tela (St. Petersburg) 39, 153–157 (January 1997)     

Existence regions of regimes with anomalously high rates of plasma generation in grid plasma switch elements

Results are presented from a systematic investigation of the conditions under which anomalously high rates of plasma generation are observed in the anode region of a low-voltage Knudsen arc in grid plasma switch elements. The phenomenon develops over a wide range of currents and switched voltages under conditions for which the plasma density in the cathode-grid region is noticeably higher than the density in the anode region. and its onset is characterized by a pronounced pressure threshold of ∼2×10⁻² Torr. The results are analyzed from the standpoint of the possible mechanisms for anomalous plasma generation — collisional nonresonance diffusion of electrons in velocity space, leading to enrichment of the distribution function in fast particles, and the collapse of Langmuir waves in the gap at the high energies of the beam produced when the wires of the grid are bridged by the quenching pulse and and the current is blocked. Zh. Tekh. Fiz. 67, 15–21 (June 1997)     

Characteristics of nonlinear reflection of radiation associated with waverfront reversal by a surface

The dependence of the nonlinear reflection coefficient R of a mirror with a wavefront reversing surface on the intensity I of the reference wave is analyzed in terms of a phenomenological model of a medium having a nonlinear Fresnel reflection amplitude coefficient φ. Substantial differences are revealed for media having different signs of the nonlinearity coefficient β=(dφ/dI). It is shown that R is related to the magnitude D of the dynamic range of the wavefront reversing mirror by the expression RD=Q_s' where Q_s is a parameter which defines the “quality” of the nonlinear medium. Far-Eastern State Academy of Communications. Translated from Izvestiya Vysshikh Uchebnykh Zavedenii, Fizika, No. 8, pp. 68–70, August, 1997.     

Propagation of magnetostatic waves in unsaturated ferrite films with a strip domain structure

The propagation of surface and volume magnetostatic waves in unsaturated films of yttrium iron garnet is studied experimentally for the case when the wavelength greatly exceeds the domain width, while the domain width is comparable to the film thickness. The characteristics of these waves are examined for symmetric linear, asymmetric linear, and symmetric zigzag strip domain structures in the films. These characteristics cannot be explained by a theory based on averaging the magnetization over all the domains. Zh. éksp. Teor. Fiz. 111, 1016–1031 (March 1997)     

Resonance enhancement of diffuse scattering of x-rays in a waveguide heterostructure

The diffuse scattering of x rays in a four-layer waveguide-type heterostructure is investigated. The dynamic enhancement of diffuse scattering is detected experimentally in regions corresponding to the excitation of waveguide modes for both the incident and scattered waves. Pis’ma Zh. éksp. Teor. Fiz. 66, No. 4, 219–223 (25 August 1997)