Conformational stability of helical peptides containing a thioamide linkage

[structure: see text] Thioxo peptide analogues of the alpha-helical peptide GCN4-p1 were synthesized and evaluated for helicity and oligomeric state. Sedimentation equilibrium and CD measurements indicate that the thioxo peptides fold into parallel alpha-helical coiled coil structures essentially identical to the native structure. This work marks the first incorporation of a thioamide linkage into the backbone of an alpha-helix and demonstrates that a thioamide linkage is compatible with positions within the helix as well as near the C-terminus.     

Electronic structures of zinc and palladium tetraazaporphyrin derivatives controlled by fused benzo rings

Zinc and palladium tetracyclic aromatic complexes lying structurally between tetraazaporphyrin (TAP) and phthalocyanine (Pc), that is, monobenzo-, adjacently dibenzo-, oppositely dibenzo-, and tribenzo-fused TAPs, have been prepared, and their electronic structures investigated by electronic absorption, magnetic circular dichroism (MCD), fluorescence, phosphorescence, and time-resolved electron paramagnetic resonance (TREPR) spectroscopy, as well as cyclic voltammetry. The last-named indicated that the first oxidation potentials shift to more negative values with increasing number of the fused benzo rings, but also suggested that the first reduction potential apparently has no correlation with the size and symmetry of the pi-conjugated systems. However, this latter behavior is reasonably interpreted by the finding that the effect of the fused benzo rings on destabilization of the LUMO depends on the orbital to which they are fused (i.e., whether it is an egx or egy orbital), since the LUMOs of TAP complexes are degenerate with D4h symmetry. The energy splitting of the LUMOs, that is, DeltaLUMO, was evaluated experimentally for the first time by analyzing the relationship between the first reduction potential and the size and shape of the pi-conjugated system. Electronic absorption and MCD measurements indicate that the lowest excited singlet states are split in the case of the low-symmetry TAP derivatives, although these excited states are degenerate for Pc and TAP with D4h symmetry. These energy splittings DeltaE(SS) correlate well with the DeltaLUMO values. To investigate the electronic structures in the lowest excited triplet state, zero-field splitting (zfs) was analyzed by time-resolved EPR (TREPR) spectroscopy. The energy splitting in the lowest excited triplet state, DeltaE(TT) was quantitatively evaluated from the temperature dependence of the zfs or spin-orbit coupling of the Pd complexes. Consequently, it is demonstrated that DeltaLUMO, DeltaE(SS), and DeltaE(TT) values exhibiting a mutually good relationship can be determined experimentally.     

Spectroscopy, electrochemistry, and molecular orbital calculations of metal-free tetraazaporphyrin, -chlorin, -bacteriochlorin, and -isobacteriochlorin

Metal-free tetraazachlorin (TAC), -bacteriochlorin (TAB), and -isobacteriochlorin (TAiB) were characterized by electronic absorption, magnetic circular dichroism (MCD), fluorescence, and time-resolved ESR (TR-ESR) spectroscopy, and by cyclic voltammetry. The results are compared with those of metal-free tetraazaporphyrin (TAP). The potential difference DeltaE between the first oxidation and reduction couples decreases in the order TAP>TAiB>TAC>TAB. The splitting of both the Q and Soret bands decreases in the order TAB>TAC>TAP>TAiB. Corresponding to the split absorption bands, MCD spectra show a minus-to-plus pattern with increasing energy in both the Q and Soret regions, which suggests that the energy difference between the HOMO and second HOMO is larger than that between the LUMO and second LUMO. These spectroscopic properties and redox potentials were reproduced by molecular orbital calculations using the ZINDO/S Hamiltonian. The fluorescence quantum yields of the reduced species are much smaller than that of TAP. The zero-field splitting (ZFS) parameters D and E of the excited triplet states (T1) of these species decrease and increase, respectively, on going from TAP to TAC and further to TAB. The D and E values of TAiB are larger than those of the other species. The results are supported by the absence of interaction between the spin over reduced pyrrole moieties of the HOMO and over the LUMO, and by calculations of ZFS under a half-point-charge approximation.     

Synthesis of calix[4]arene library substituted with peptides at the upper rim

A fluorescence-labeled calix[4]arene library substituted with peptides at the upper rim was synthesized. Screening of the library for binding a dye-labeled oligopeptide indicated that some peptidocalix[4]arenes selectively bind the oligopeptide. The chemosensitivity of the library members for a target peptide was also investigated.     

Bromination by means of sodium monobromoisocyanurate (SMBI)

A variety of aromatic compounds with both activating and deactivating substituents were brominated with sodium monobromoisocyanurate (SMBI) 1, diethyl ether, diethyl ether-methanesulfonic acid, trifluoroacetic acid, or sulfuric acid were employed as solvents. Thus nitrobenzene was conveniently brominated in sulfuric acid, benzene was readily monobrominated in diethyl ether-methanesulfonic acid, and phenol was selectively brominated at the ortho position under mild conditions in refluxing diethyl ether. With substituents that are easily protonated, trifluoroacetic acid may be employed as solvent in the reaction with 1, in contrast NBS was ineffective in trifluoroacetic acid. This renders 1 a superior reagent relative to NBS. In addition to aromatics, alkenes, ketones and esters were also brominated with 1. Diethyl malonate was brominated with 1 and then subjected to a Bingel reaction with NaH to afford the desired methanofullerene in reasonable yield.     

Ion Chromatography of Inorganic Anions on Graphitic Carbon as the Stationary Phase

Inorganic anions could be separated on porous graphitic carbon stationary phases in ion chromatography. Ion exchange between eluent anions and sample anions on the stationary phase was confirmed by the retention behavior and the possibility of indirect photometric detection. The elution order of anions was different from that observed for commercially available anion exchangers. Chloride, nitrate, and sulfate contained in tap water could be determined in 7 min.     

Fouling in air sparged submerged hollow fiber membranes at sub- and super-critical flux conditions

The overall objective of the present study was to characterize the effect of operating a submerged air sparged membrane system over a wide range of operating conditions (i.e. sub- and super-critical flux conditions) on the extent and mechanisms of membrane fouling during drinking water treatment. The sub- and super-critical flux conditions considered were generated by varying the operating permeate flux, the bulk cross-flow velocity, the flow characteristics (i.e. with or without air sparging) and the configuration of the membrane modules.     

Development of calixarene-based host molecules for peptides in aqueous media

We synthesized a peptidocalix[4]arene library consisting of 1000 members that was suitable for peptide recognition in aqueous media. Some peptidocalix[4]arenes in the library were host molecules for guest peptides. Electrostatic interaction between the host and guest molecules was the most important factor for binding in aqueous media.     

Determination of residual fluoroquinolones in honey by liquid chromatography using metal chelate affinity chromatography

A new analytical method for the simultaneous determination of seven fluoroquinolones, namely, norfloxacin, ciprofloxacin, danofloxacin, enrofloxacin, orbifloxacin, sarafloxacin, and difloxacin, especially in dark-colored honey, has been developed. Fluoroquinolone antibiotics were extracted from samples with MacIlvaine buffer solution (pH 4.0) containing EDTA disodium salt dihydrate. The extracts were treated with both a polymeric cartridge and a metal chelate affinity column preloaded with ferric ion (Fe3+). LC separation with fluorescence detection was performed at 40 degrees C using an Inertsil ODS-4 analytical column (150 x 4.6 mm, 3 microm). The mobile phase was composed of 20 mM/L citrate buffer solution (pH 3.1)-acetonitrile mixture (70 + 30, v/v) containing 1 mM/L sodium dodecyl sulfate. Lomefloxacin was used as an internal standard. The developed method was validated according to the criteria of European Commission Decision 2002/657/EC. Decision limits and detection capabilities were below 2.9 and 4.4 microg/kg, respectively.     

Microcolumn ion chromatography with conductimetric detection

Summary A miniaturized flow cell for an electrical conductivity detector has been made and applied to the ion chromatography of inorganic anions. It consisted of stainless steel tubes (0.13 mm ID×0.31 mm OD) and PTFE tubes (0.25 mm ID×2 mm OD). The detection limit for chloride at S/N=3 was 36 pg or 0.33 ppm for a 0.11 l injection.