Conformational stability of helical peptides containing a thioamide linkage

[structure: see text] Thioxo peptide analogues of the alpha-helical peptide GCN4-p1 were synthesized and evaluated for helicity and oligomeric state. Sedimentation equilibrium and CD measurements indicate that the thioxo peptides fold into parallel alpha-helical coiled coil structures essentially identical to the native structure. This work marks the first incorporation of a thioamide linkage into the backbone of an alpha-helix and demonstrates that a thioamide linkage is compatible with positions within the helix as well as near the C-terminus.     

Bromination by means of sodium monobromoisocyanurate (SMBI)

A variety of aromatic compounds with both activating and deactivating substituents were brominated with sodium monobromoisocyanurate (SMBI) 1, diethyl ether, diethyl ether-methanesulfonic acid, trifluoroacetic acid, or sulfuric acid were employed as solvents. Thus nitrobenzene was conveniently brominated in sulfuric acid, benzene was readily monobrominated in diethyl ether-methanesulfonic acid, and phenol was selectively brominated at the ortho position under mild conditions in refluxing diethyl ether. With substituents that are easily protonated, trifluoroacetic acid may be employed as solvent in the reaction with 1, in contrast NBS was ineffective in trifluoroacetic acid. This renders 1 a superior reagent relative to NBS. In addition to aromatics, alkenes, ketones and esters were also brominated with 1. Diethyl malonate was brominated with 1 and then subjected to a Bingel reaction with NaH to afford the desired methanofullerene in reasonable yield.     

Development of calixarene-based host molecules for peptides in aqueous media

We synthesized a peptidocalix[4]arene library consisting of 1000 members that was suitable for peptide recognition in aqueous media. Some peptidocalix[4]arenes in the library were host molecules for guest peptides. Electrostatic interaction between the host and guest molecules was the most important factor for binding in aqueous media.     

Bicyclo[3.2.1]octane and 6-oxabicyclo[3.2.2]nonane type neolignans from Magnolia denudata

From the ethyl acetate soluble fraction of twigs of Magnolia denudata (Magnoliaceae), seven new neolignan derivatives, 1-7, were isolated along with eighteen known lignan and neolignan derivatives, 8-25. The structures of the new neolignans were elucidated by means of spectral methods, especially by 1H-NMR and 13C-NMR spectra, and two dimensional NMR methods such as 1H-detected heteronuculear multiple bond connectivity1 (HMBC), 1H-detected multiple quantum coherence (HMQC) and 1H-1H-correlation spectroscopy (COSY). Compounds 1-4 have novel structures possessing a 6-oxabicyclo[3.2.2]nonane skeleton and compounds 5-8 also have novel structures possessing a bicyclo[3.2.1]octane skeleton. The anti-platelet-activating factor (PAF) activity of these compounds was tested by measurement of inhibition activity against acetyl transferase to lyso-PAF.     

Microcolumn ion chromatography with conductimetric detection

Summary A miniaturized flow cell for an electrical conductivity detector has been made and applied to the ion chromatography of inorganic anions. It consisted of stainless steel tubes (0.13 mm ID×0.31 mm OD) and PTFE tubes (0.25 mm ID×2 mm OD). The detection limit for chloride at S/N=3 was 36 pg or 0.33 ppm for a 0.11 l injection.     

Seven-membered vibsane-type diterpenes with a 5,10-cis relationship from Viburnum awabuki

New five seven-membered vibsane-type diterpenes named 5-epi-vibsanin C, 5-epi-vibsanin H, 5-epi-vibsanin K, 18-O-methyl-5-epi-vibsanin K and 5-epi-vibsanin E have been isolated from the leaves of Viburnum awabuki (Caplifoliaceae). Their structures have been elucidated by analyses of spectroscopic data and comparison of their spectral data with those of the previously known seven-membered vibsane-type diterpenes. The occurrence of these seven-membered vibsane-type diterpenes with a cis relationship on the C-5 and C-10 positions in nature have been predicted by conformational analysis of vibsanin B, an eleven-membered vibsane-type diterpene. Vibsanin C, 5-epi-vibsanin C and 5-epi-vibsanin H exhibited moderate cytotoxic activities on KB cells.     

Electronic structures of zinc and palladium tetraazaporphyrin derivatives controlled by fused benzo rings

Zinc and palladium tetracyclic aromatic complexes lying structurally between tetraazaporphyrin (TAP) and phthalocyanine (Pc), that is, monobenzo-, adjacently dibenzo-, oppositely dibenzo-, and tribenzo-fused TAPs, have been prepared, and their electronic structures investigated by electronic absorption, magnetic circular dichroism (MCD), fluorescence, phosphorescence, and time-resolved electron paramagnetic resonance (TREPR) spectroscopy, as well as cyclic voltammetry. The last-named indicated that the first oxidation potentials shift to more negative values with increasing number of the fused benzo rings, but also suggested that the first reduction potential apparently has no correlation with the size and symmetry of the pi-conjugated systems. However, this latter behavior is reasonably interpreted by the finding that the effect of the fused benzo rings on destabilization of the LUMO depends on the orbital to which they are fused (i.e., whether it is an egx or egy orbital), since the LUMOs of TAP complexes are degenerate with D4h symmetry. The energy splitting of the LUMOs, that is, DeltaLUMO, was evaluated experimentally for the first time by analyzing the relationship between the first reduction potential and the size and shape of the pi-conjugated system. Electronic absorption and MCD measurements indicate that the lowest excited singlet states are split in the case of the low-symmetry TAP derivatives, although these excited states are degenerate for Pc and TAP with D4h symmetry. These energy splittings DeltaE(SS) correlate well with the DeltaLUMO values. To investigate the electronic structures in the lowest excited triplet state, zero-field splitting (zfs) was analyzed by time-resolved EPR (TREPR) spectroscopy. The energy splitting in the lowest excited triplet state, DeltaE(TT) was quantitatively evaluated from the temperature dependence of the zfs or spin-orbit coupling of the Pd complexes. Consequently, it is demonstrated that DeltaLUMO, DeltaE(SS), and DeltaE(TT) values exhibiting a mutually good relationship can be determined experimentally.     

Spectroscopy, electrochemistry, and molecular orbital calculations of metal-free tetraazaporphyrin, -chlorin, -bacteriochlorin, and -isobacteriochlorin

Metal-free tetraazachlorin (TAC), -bacteriochlorin (TAB), and -isobacteriochlorin (TAiB) were characterized by electronic absorption, magnetic circular dichroism (MCD), fluorescence, and time-resolved ESR (TR-ESR) spectroscopy, and by cyclic voltammetry. The results are compared with those of metal-free tetraazaporphyrin (TAP). The potential difference DeltaE between the first oxidation and reduction couples decreases in the order TAP>TAiB>TAC>TAB. The splitting of both the Q and Soret bands decreases in the order TAB>TAC>TAP>TAiB. Corresponding to the split absorption bands, MCD spectra show a minus-to-plus pattern with increasing energy in both the Q and Soret regions, which suggests that the energy difference between the HOMO and second HOMO is larger than that between the LUMO and second LUMO. These spectroscopic properties and redox potentials were reproduced by molecular orbital calculations using the ZINDO/S Hamiltonian. The fluorescence quantum yields of the reduced species are much smaller than that of TAP. The zero-field splitting (ZFS) parameters D and E of the excited triplet states (T1) of these species decrease and increase, respectively, on going from TAP to TAC and further to TAB. The D and E values of TAiB are larger than those of the other species. The results are supported by the absence of interaction between the spin over reduced pyrrole moieties of the HOMO and over the LUMO, and by calculations of ZFS under a half-point-charge approximation.     

Reactivity ratios for copolymerization of vinyl chloride with 2-methylpentyl vinyl brassylate by computerized linearization

A computerized version of the Fineman-Ross linearization procedure was used to determine reactivity ratios for copolymerization of vinyl chloride (monomer 1) and 2-methylpentyl vinyl brassylate (monomer 2). From differential refractometry data for the products of low-conversion copolymerization, the procedure gave r₁ = 1.06 and r₂ = 0.234. The ratios computed from chlorine contents of the same products were r₁ = 1.10 and r₂ = 0.239. The polarity factor (e₂) and general monomer reactivity (Q₂) calculated for monomer 2 from these ratios were, respectively, ?0.95 to ?0.98 and 0.032–0.033. The interquartile range for the copolymerization of a mixture of 60% monomer 1 and 40% monomer 2 was 1.4%. These values suggest that from suitable proportions of reactants, sufficiently homogeneous distribution of monomers can be achieved in copolymers of vinyl chloride and 2-methylpentyl vinyl brassylate to offer the possibility of effective internal plasticization.     

Synthesis of New Polyphosphazenes. The Reactions of Poly(dichlorophosphazene) with Aminotetraalkoxycyclotriphosphazene and Sodium Phenoxide

Abstract

A new poly(organophosphazenes) copolymer was formed from the reaction of aminopentafluoroethoxycyclotriphosphazene, sodium phenoxide, and poly(dichlorophosphazene). The polymer was thermoplastic and the T_g increased with an increasing amount of the phenol group. The T_g of the polymer with aminopentafluoroethoxycyclotriphosphazene attached as a pendant group was similar to the T_g of polyfluoroethoxyphosphazene.