Mössbauer and NMR studies of iron-carbon martensite

The atomic arrangements in Fe-C martensite, especially the interstitial carbon positions have been discussed utilizing⁵⁷Fe Mössbauer spectroscopy and¹³C and⁵⁷Fe spin-echo NMR measurements. The experimental result is well explained by the model of two interstices occupancy of carbon in the bct martensite. Especially, the spin-echo spectra by¹³C nuclei showed that two main lines first appear and clear satellite lines gradually rise during the aging at 323K, suggesting the carbon jumps from the tetrahedral to the octahedral interstices and further movements to form a local ordered arrangement.     

Pipette tip biosensors for bacterial double-stranded DNA using bioluminescence induced by zinc finger luciferase

The authors describe a pipette type of biosensor for detecting target genes and using a zinc finger protein fused to luciferase (ZF luciferase). The ZF protein binds to a specific DNA sequence, and the target double-stranded (ds) DNA can be detected by monitoring the enzymatic activity of ZF luciferase. A small avidin-immobilized reaction plate is placed on a plastic pipette tip (referred to as Biologi tip). The dsDNA detection procedures are carried out by using a programmable dispensing robot equipped with a photodetector. These procedures include (a) the aspiration of an analyte to capture the biotinylated target dsDNA (a product of a polymerase chain reaction) on the small reaction plate inside the pipette tip, (b) the introduction of ZF luciferase and luciferin into the pipette tip, and (c) migration of the pipette tip to the detection port to measure bioluminescence on the small reaction plate. The emission originating from luciferase activity is observed on the reaction plate containing immobilized biotin-tagged target dsDNA, whereas plates containing non-target or biotinylated single-stranded DNA only do not yield a signal. The intensity of emission increases proportionally to the concentration of dsDNA, and the detection limit of the target dsDNA is as low as 62 pM. An actual genomic DNA sample from Escherichia coli O157 was successfully detected by this automatic analyzer using the Biologi tip equipped with a reaction plate. This indicates that this system has a large potential for practical applications, including in particular point-of-care analyses in hygiene control, food safety testing, and clinical diagnosis.

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Graphical abstract A pipette-type biosensor was developed to detect target genes using a luciferase-fused zinc finger protein, where a small NeutrAvidin-immobilized reaction plate was placed on the tip, and the biotinylated target double-stranded DNA was detected by monitoring the bound luciferase activity.

     

Precise synthesis of a series of poly(4‐n‐alkylstyrene)s and their glass transition temperatures

Poly(4‐n‐alkylstyrene)s with six kinds of n‐alkyl groups such as methyl, ethyl, propyl, butyl, hexyl, and octyl groups covering wide molecular weight range from around 5 k to over 100 k were precisely synthesized by living anionic polymerizations. It was confirmed that all the polymers obtained have narrow molecular weight distribution, that is, M_w/M_n is all less than 1.1, by SEC. T_gs of all the polymers were estimated by DSC measurements and it turned out to be clear that their molecular weight dependence was well described by the Fox–Flory equations. Furthermore, it is evident that T_g monotonically decreases as a number of carbon atoms of n‐alkyl group is increased, though T_g values are all 20 K or more higher than those reported previously for the same polymer series. This is because backbone mobility increases by introducing longer n‐alkyl side groups with high mobility, while T_g difference in between this work and the previous one may due to the experimental conditions and also to the molecular weight range adopted. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55, 757–763     

Alkyl side chain length dependent compatibility of poly(4‐n‐alkylstyrene)s and 1,4‐rich polyisoprene blends

We investigated the compatibility of blends of 1,4‐rich polyisoprene (1,4‐PI) and poly(4‐n‐alkylstyrene)s with six kinds of n‐alkyl side groups, that is, methyl, ethyl, propyl, butyl, hexyl, and octyl focusing on carbon number of alkyl groups. Poly(4‐methylstyrene)/1,4‐PI blend was turned out to be immiscible at all temperature range adopted in this work and poly(4‐ethylstyrene)/1,4‐PI blend revealed UCST type phase behavior, while the others were found to be compatible. The phase diagrams of poly(4‐ethylstyrene)/1,4‐PI blends were obtained by optical microscopy, and the temperature dependence of the Flory‐Huggins interaction parameter χ has been estimated to be χ = ?0.036 + 24/T by applying lattice theory, where T is the absolute temperature. From this relationship χ value at room temperature (298 K) was calculated to be 0.045, the value is reasonably low for miscible polymers system. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2017 , 55 , 1791–1797     

Sasakian manifolds with vanishing C-Bochner curvature tensor

Supported by TGRC-KOSEF.     

Global Convergence Properties of Nonlinear Conjugate Gradient Methods with Modified Secant Condition

Conjugate gradient methods are appealing for large scale nonlinear optimization problems. Recently, expecting the fast convergence of the methods, Dai and Liao (2001) used secant condition of quasi-Newton methods. In this paper, we make use of modified secant condition given by Zhang et al. (1999) and Zhang and Xu (2001) and propose a new conjugate gradient method following to Dai and Liao (2001). It is new features that this method takes both available gradient and function value information and achieves a high-order accuracy in approximating the second-order curvature of the objective function. The method is shown to be globally convergent under some assumptions. Numerical results are reported.     

Mössbauer study of the transition metal phosphorus trichalcogenide FePS3 and spin glass Mn0.5Fe0.5PS3

The transition metal phosphorus trichalcogenides MnPS₃ and the FePS₃ are CdCl₂ type layered compounds, where the transition metal ions form a hexagonal lattice. While these compounds order anti-ferromagnetically at low temperature, the magnetic structures are different. We have reported that these mixtures Mn_0.5Fe_0.5PS₃ is a spin glass with a glass transition temperature T _g=33.7 K. Then, in this work, we report that the results of the temperature variation of the ⁵⁷Fe Mössbauer spectra of FePS₃ and Mn_0.5Fe_0.5PS₃, in detail. In the anti-ferromagnetic state of FePS₃, the hyperfine magnetic field H _int increases with decreasing temperature and the Isomer shift I. S. increases slightly with decreasing temperature. However in Mn_0.5Fe_0.5PS₃, the two broadened peaks are observed and the two peaks became a single peak with decreasing temperature at about 50.0 K, which is higher than T _g=33.7 K. In the spin glass Mn_0.5Fe_0.5PS₃, the Mössbauer spectra suggest that the magnetic interactions exist far above T _g.     

A microporous membrane-based continuous generation system for trace-level standard mixtures of atmospheric gases.

A reliable and convenient system to generate accurate and stable standard gas mixtures of various atmospheric compounds at parts-per-billion levels has been developed. The system is of simple design; the generator is a coil consisting of an inner tube of microporous polytetrafuluoroethylene (PTFE) membrane tubing and an outer tube of silicone tubing. An aqueous solution of the given compound continuously flows through the inner microporous tube and the purge gas flows through the annulus between the inner and outer tubes. In addition to the generation of gas mixtures based on Henry's law, the proposed flow-type system offers generation based on chemical reactions, leading to a distinct advantage of the availability of continuous sources of various compounds. The generation system was tested for preparing standard gas mixtures of HCHO and H2O2 on the basis of Henry's law, and those of HNO2, NO, and SO2 on the basis of chemical reactions. A stable generation of the desired low concentrations of various kinds of gas mixtures can be readily achieved by adjusting the concentration of the solution without the use of high-dilution flow.     

Enhanced conformational sampling method for proteins based on the TaBoo SeArch algorithm: Application to the folding of a mini‐protein,chignolin

The conformational samplings are indispensible for obtaining reliable canonical ensembles, which provide statistical averages of physical quantities such as free energies. However, the samplings of vast conformational space of biomacromolecules by conventional molecular dynamics (MD) simulations might be insufficient, due to their inadequate accessible time‐scales for investigating biological functions. Therefore, the development of methodologies for enhancing the conformational sampling of biomacromolecules still remains as a challenging issue in computational biology. To tackle this problem, we newly propose an efficient conformational search method, which is referred as TaBoo SeArch (TBSA) algorithm. In TBSA, an inverse energy histogram is used to select seeds for the conformational resampling so that states with high frequencies are inhibited, while states with low frequencies are efficiently sampled to explore the unvisited conformational space. As a demonstration, TBSA was applied to the folding of a mini‐protein, chignolin, and automatically sampled the native structure (C_α root mean square deviation < 1.0 Å) with nanosecond order computational costs started from a completely extended structure, although a long‐time 1‐µs normal MD simulation failed to sample the native structure. Furthermore, a multiscale free energy landscape method based on the conformational sampling of TBSA were quantitatively evaluated through free energy calculations with both implicit and explicit solvent models, which enable us to find several metastable states on the folding landscape. © 2015 Wiley Periodicals, Inc.