Determination of protein-ligand affinity constants from direct migration time in capillary electrophoresis

A simple method to calculate dissociation constants for protein-ligand interactions by partial-filling capillary electrophoresis is demonstrated. The method uses raw migration time data for the ligand and needs only additional information about capillary inner radius and the absolute amount of protein loaded. A theoretical study supported by experimental data also demonstrates that the retention of analyte in affinity capillary electrophoresis (ACE) using the partial-filling technique depends linearly on the absolute amount of selector added but is independent of both selector zone length and selector mobility. Factors such as field strength and electroosmotic flow are also cancelled out if they are kept constant. The theory is confirmed and the usefulness of the method is demonstrated by enantioseparations using alpha-acid glycoprotein (AGP) and cellulase (Cel 7A) as chiral selectors.     

Conformational effects on glycoside reactivity: study of the high reactive conformer of glucose

The effect of conformation on glycoside reactivity was investigated by studying the hydrolysis of a selection of 3,6-anhydroglucosides as models for glucose in the highly reactive (1)C(4) conformation. Methyl 3,6-anhydro-beta-D-glucopyranoside was found to hydrolyze 200-400 times faster than methyl glucosides in the (4)C(1) conformation, while methyl 3,6-anhydro-beta-D-galactopyranoside, which is in the B(1,4) conformation, was less reactive than methyl beta-D-galactopyranoside. Methyl (3,6-anhydro-beta-D-glucopyranosyl)-(1 --> 6)-alpha-D-glucopyranoside, methyl (3,6-anhydro-alpha-D-glucopyranosyl)-(1 --> 6)-alpha-D-glucopyranosyl-(1 --> 6)-alpha-D-glucopyranoside, and methyl (3,6-anhydro-beta-D-glucopyranosyl)-(1 --> 6)-alpha-D-glucopyranosyl-(1 --> 6)-alpha-D-glucopyranoside were prepared and found to react selectively at the anhydro residue. The finding that (1)C(4) conformers of glucosides are highly reactive species is in accordance with and supports previous results showing that axial OH groups are less electron withdrawing than equatorial OH groups.     

Radiation grafting of styrene onto poly(vinylidene fluoride) films in propanol: The influence of solvent and synthesis conditions

Electron‐beam‐irradiated poly(vinylidene fluoride) films were grafted with styrene with propanol or toluene as a solvent. The influence of the synthesis conditions and, more particularly, of the solvent was investigated. In propanol, the order of dependence of the grafting rate is 0.43 on the pre‐irradiation dose and 1.2 on the monomer concentration. The activation energy of the grafting reaction in propanol is approximately 73 kJ/mol. Both the initial grafting rate and the saturation degree of grafting are considerably higher in propanol, which is unable to swell polystyrene grafts, than in toluene, which diffuses with styrene through the grafted moiety. The grafting solvent also influences the structure of the membrane: films grafted in propanol have a much reduced elongation at break and a rougher surface. It is suggested that phase‐separated polystyrene domains may be larger when grafting is carried out in a styrene–propanol solution. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 1512–1519, 2000     

Calorimetric and relaxation properties of xylitol-water mixtures

We present the first broadband dielectric spectroscopy (BDS) and differential scanning calorimetry study of supercooled xylitol-water mixtures in the whole concentration range and in wide frequency (10(-2)-10(6) Hz) and temperature (120-365 K) ranges. The calorimetric glass transition, T(g), decreases from 247 K for pure xylitol to about 181 K at a water concentration of approximately 37 wt. %. At water concentrations in the range 29-35 wt. % a plentiful calorimetric behaviour is observed. In addition to the glass transition, almost simultaneous crystallization and melting events occurring around 230-240 K. At higher water concentrations ice is formed during cooling and the glass transition temperature increases to a steady value of about 200 K for all higher water concentrations. This T(g) corresponds to an unfrozen xylitol-water solution containing 20 wt. % water. In addition to the true glass transition we also observed a glass transition-like feature at 220 K for all the ice containing samples. However, this feature is more likely due to ice dissolution [A. Inaba and O. Andersson, Thermochim. Acta, 461, 44 (2007)]. In the case of the BDS measurements the presence of water clearly has an effect on both the cooperative α-relaxation and the secondary β-relaxation. The α-relaxation shows a non-Arrhenius temperature dependence and becomes faster with increasing concentration of water. The fragility of the solutions, determined by the temperature dependence of the α-relaxation close to the dynamic glass transition, decreases with increasing water content up to about 26 wt. % water, where ice starts to form. This decrease in fragility with increasing water content is most likely caused by the increasing density of hydrogen bonds, forming a network-like structure in the deeply supercooled regime. The intensity of the secondary β-relaxation of xylitol decreases noticeably already at a water content of 2 wt. %, and at a water content above 5 wt. % it has been replaced by a considerably stronger water (w) relaxation at about the same frequency. However, the similarities in time scale and activation energy between the w-relaxation and the β-relaxation of xylitol at water contents below 13 wt. % suggest that the w-relaxation is governed, in some way, by the β-relaxation of xylitol, since clusters of water molecules are rare at these water concentrations. At higher water concentrations the intensity and relaxation rate of the w-relaxation increase rapidly with increasing water content (up to the concentration where ice starts to form), most likely due to a rapid increase of small water clusters where an increasing number of water molecules interacting with other water molecules.     

Significance of fatigue for mechanical defibration

The fatigue induced by high-frequency cyclic loading on the compressibility and tensile properties of wood and wood cell walls was quantified. The non-elastic behavior of fatigued and reference samples was similar, whereas their elastic behavior differed, as expected. Next, the effects of the dynamic fatigue on the mechanical pulping process were quantified by grinding fatigued and untreated samples and by comparing the paper strength produced by the two pulps against the consumed pulping energy. Pre-introducing fatigue increased the energy efficiency of grinding and may allow designing a more energy efficient mechanical pulping process.     

Qualitative evaluation of thermal desorption-programmable temperature vaporization-comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry for the analysis of selected halogenated contaminants

The separation of 38 toxic and predominant polychlorinated biphenyl (PCB) congeners, 11 persistent halogenated pesticides, 1 brominated biphenyl (BB), and 8 polybrominated diphenyl ethers (PBDEs) has been optimized using comprehensive two-dimensional gas chromatography coupled to time-of-flight mass spectrometry (GC x GC-TOFMS). A thermal desorption-programmable temperature vaporization (TD-PTV) step was used for the injection. Different column sets were investigated, and a 100% dimethylpolysiloxane (15 m x 0.25 mm i.d. x 0.25 microm film thickness) narrowbore capillary column coupled to a high temperature (8% phenyl)-polycarborane-siloxane (2 m x 0.10 mm i.d. x 0.10 microm film thickness) microbore column set was selected. Of the 58 compounds investigated, only one pair of PCBs was not resolved. All other analytes were either baseline separated into the chromatographic plane or were virtually separated using the deconvolution capability of the TOFMS.     

Synthesis of Styrenes by Palladium(II)‐Catalyzed Vinylation of Arylboronic Acids and Aryltrifluoroborates by Using Vinyl Acetate

One Heck of a reaction : Treatment of arylboronic acids or aryltrifluoroborates with vinyl acetate by using a palladium(II) catalyst gives the corresponding styrenes (see scheme). No palladium reoxidant is needed and the vinylation is performed under non‐inert conditions

     

A Different Approach to Enantioselective Organic Synthesis: Absolute Asymmetric Synthesis of Organometallic Reagents

Voilà, optical activity : Both enantiomers of 1‐chloroindene have been synthesized in high selectivity from solely achiral starting materials, and without using optically active catalysts (see scheme). These symmetry‐breaking syntheses provide a proof‐of‐concept for a new approach to asymmetric synthesis. NCS=N‐chlorosuccinimide.

     

Phase separation and crystallinity in proton conducting membranes of styrene grafted and sulfonated poly(vinylidene fluoride)

A series of proton exchange membranes have been prepared by the preirradiation grafting method. Styrene was grafted onto a matrix of poly(vinylidene fluoride) (PVDF) after electron beam irradiation. Part of the samples was crosslinked with divinylbenzene (DVB) or bis(vinylphenyl)ethane (BVPE). Subsequent sulfonation gave membranes grafted with poly(styrene sulfonic acid) and marked PVDF‐g‐PSSA. It was found that the intrinsic crystallinity of the matrix decreased in both the grafting and the sulfonation reaction in all the membranes. The graft penetration and the ion conductivity are influenced strongly by the crosslinker. The ion conductivity is considerably lower in crosslinked membranes than in noncrosslinked ones. Generally, the mechanical strength decreases with crosslinking. The membranes show a regular phase separated structure in which the sulfonated grafts are incorporated in the amorphous parts of the matrix polymer. The phase separated domains are small, of the order of magnitude of 100–250 nm. These were resolved on transmission electron micrographs and on atomic force images but could not be resolved with microprobe Raman spectroscopy. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 1741–1753, 1999     

Matrix stretching for sparse least squares problems

For linear least squares problems min _x ‖Ax − b‖₂, where A is sparse except for a few dense rows, a straightforward application of Cholesky or QR factorization will lead to catastrophic fill in the factor R. We consider handling such problems by a matrix stretching technique, where the dense rows are split into several more sparse rows. We develop both a recursive binary splitting algorithm and a more general splitting method. We show that for both schemes the stretched problem has the same set of solutions as the original least squares problem. Further, the condition number of the stretched problem differs from that of the original by only a modest factor, and hence the approach is numerically stable. Experimental results from applying the recursive binary scheme to a set of modified matrices from the Harwell‐Boeing collection are given. We conclude that when A has a small number of dense rows relative to its dimension, there is a significant gain in sparsity of the factor R. A crude estimate of the optimal number of splits is obtained by analysing a simple model problem. Copyright © 2000 John Wiley & Sons, Ltd.