205Tl NMR methods for the characterization of monovalent cation binding to nucleic acids

Monovalent cations play an important role in many biological functions. The guanine rich sequence, d(G4T4G4), requires monovalent cations for formation of the G-quadruplex, d(G4T4G4)2. This requirement can be satisfied by thallium (Tl+), a potassium (K+) surrogate. To verify that the structure of d(G4T4G4)2 in the presence of Tl+ is similar to the K+-form of the G-quadruplex, the solution structure of the Tl+-form of d(G4T4G4)2 was determined. The 10 lowest energy structures have an all atom RMSD of 0.76 +/- 0.16 A. Comparison of this structure to the identical G-quadruplex formed in the presence of K+ validates the isomorphous nature of Tl+ and K+. Using a 1H-205Tl spin-echo difference experiment we show that, in the Tl+-form of d(G4T4G4)2, small scalar couplings (<1 Hz) exist between 205Tl and protons in the G-quadruplex. These data comprise the first 1H-205Tl scalar couplings observed in a biological system and have the potential to provide important constraints for structure determination. These experiments can be applied to any system in which the substituted Tl+ cations are in slow exchange with the bulk ions in solution.     

Different strategies to assess Cu and Pb mobilization in polluted river sediments

Summary For studying the mechanisms of trace metal mobilization in sediments several strategies have been employed, such as single extraction, sequential extractions, ion exchange, or progressive acidification. Several authors assert that sequential extraction is the best option. In this study two procedures are used in order to assess the mobility of copper and lead in heavily polluted river sediments: sequential extraction using a modified Tessier procedure, and progressive acidification, using an automated method. Six heavily polluted sediment samples are studied by applying the two procedures. The amount of metal released at different pH-values (pH 5 and pH 2) is compared with the resulting distribution when the sequential extraction procedure is applied. The information obtained from the two different approaches is discussed. For both metals a different behaviour is observed when applying each of the two procedures. Thus, copper is more easily released than lead when progressive acidification is followed, whereas an inverse situation is observed when sequential extraction is applied.     

PHYSIOLOGICAL RELATIONSHIPS BETWEEN PHYTOCHROME EFFECTS ON INTERNODE EXTENSION GROWTH AND DRY MATTER ACCUMULATION INLIGHT-GROWN MUSTARD

The physiological relationships between the effects of phytochrome photoequilibrium (Pfr/P) on internode extension growth and dry matter accumulation were investigated in white light (WL)-grown Sinapis alba L. seedlings. After 11 days under continuous WL, the seedlings were exposed: (a) to pulses of light providing different Pfr/P, followed by 24 h darkness (D); (b) to pulses of light providing different Pfr/P, followed by 3 h D and 24 h continuous WL; (c) to continuous WL with or without supplementary far-red light (to reduce Pfr/P); or (d) to pulses of light providing different Pfr/P followed by D, in factorial combination with either water or a saturating (0.2 M) sucrose solution applied to one of the leaves. In D (“a” and “d”) low, compared to high Pfr/P increased both internode extension growth and dry weight to the same extent. Under WL (“b” and “c”) low PfrlP promoted internode extension growth but had no proportional effects on internode dry weight. Sucrose promoted internode extension growth with a lag of at least 8 h (compared to the rapid effect of low Pfr/P) and did not reduce the effect of low Pfr/P. These results indicate that Pfr/P effects on internode extension growth are not the consequence of changes in photoassimilate translocation from the leaves. Under WL, PfdP effects on internode length occur partially at the expense of internode dry matter per unit length.     

Conformational and stereoelectronic investigation in 1,2-difluoropropane: The gauche effect

The effect of attaching an additional fluorine atom at C-2 in 1-fluoropropane (FP), giving 1,2-difluoropropane (DFP), on its conformational equilibrium, is theoretically evaluated. This substitution causes critical implications on the conformer stabilities of DFP (TG, GT and GG conformations) and the steric and electrostatic interactions should favor the conformer with fluorine atoms trans. However, the gauche effect plays a major role in describing the energies balance in DFP, shifting the equilibrium towards the conformation in which the two fluorine atoms are gauche. The origin of this effect is discussed through an NBO analysis, which allows the evaluation of both classical and non-classical (hyperconjugation and bent bonds) interactions as the prevailing factors governing the conformational equilibrium of molecules containing the 1,2-difluoroethane fragment.     

Pollutants leaching behaviour from solidified wastes: a selection of adapted various models

Leaching tests are essential in the environmental assessment of stabilized wastes. Research programmes were conducted on their interpretation in order to develop tools for the evaluation of long term release of pollutants contained in solidified wastes. Models for the leaching of porous materials are discussed in this paper according to the specificity of the chemical species (i.e. transport model with total dissolution of species-diffusional model; transport model with progressive dissolution of species due to limitation of solubility-shrinking core model; and the model coupling transport and chemical phenomena). The leaching behaviour of pollutants (i.e. lead) solidified in a cement matrix was studied under different chemical conditions. Results have shown that the release of species whose solubilities depend on the physico-chemical conditions, and especially the pH (e.g. amphoteric metals), is governed by the solubility of the species in the pore water at local conditions and by the pH evolution within the matrix. A coupled dissolution/diffusion model was developed to describe the release of chemically complex species contained in a porous medium in contact with water. Leaching tests of cement matrices and artificial porous matrices containing calcium hydroxide and pollutants were conducted in order to validate the coupled dissolution/diffusion model. A good assessment of the retention of some pollutants contained in cement matrices could then be obtained by the association of two tests: solubilization of the pollutants related to the chemical context (pH) under steady state conditions and monolithic long term dynamic leaching tests in order to characterize the evolution of the chemical context (pH) and consequently the release of pollutants. The objective is to integrate this approach in the standardization process (CEN TC 292- WG 6, in progress).     

Evaluation of 40K in food by determining total potassium using neutron activation analysis

Summary Potassium is an extremely important major element to the human body. Potassium is made up of three isotopes with abundances of ³⁹K at 93.1%, ⁴⁰K at 0.0118% and ⁴¹K at 6.88%. It is also very well known that ⁴⁰K with its 1.3 ^. 10⁹ years half-life is a major naturally occurring isotope in the body and food. The usual way to determine total ⁴⁰K is to measure the single 1460.8 keV photon from beta-decay. However, this procedure requires a significant amount of sample and typical counting periods of at least a day in well-shielded germanium counting system. Another approach is to determine total potassium via neutron activation analysis using the well known ⁴¹K(n,g)⁴²K (T_1/2 = 12.8 h) reaction and then evaluate ⁴⁰K using the usual activity equation A = lN. In our laboratory we have effectively used epithermal neutron activation analysis and Compton suppression to determine potassium in air filters and other geological material. Upwards to 10-15 samples can be analyzed in one day using only gram quantities of material. In such way one can increase the output of determining ⁴⁰K by at least one order of magnitude. Results of a detailed investigation optimization of the methodology, quality control and detection limits will be presented for reference material and various food samples.     

Structural control in self-standing mesostructured silica oriented membranes and xerogels

Large pore (a = 150-200 A) wormlike and highly oriented cubic (IM3m space group) and 2D-hexagonal (P6m) mesostructured xerogels have been reproducibly synthesised by Evaporation-Induced Self Assembly (EISA). Mesostructure control was attained by changing the template (nonionic block copolymer) and water (h = [H2O]/[Si]) ratio.     

Multiple solutions of boundary value problems: an elementary approach via the shooting method

In this paper we derive the existence of multiple solutions for boundary value problems of the type $$u\prime \prime + f\left( {t,u} \right) = 0,u\left( 0 \right) = 0,u\left( \pi \right) = 0$$ , in terms of the behaviour of the ratiof(t,u)/u nearu=0 and near infinity. The nonlinear termf is assumed to be locally Lipschitz inu, so that the shooting method can be used. (AMS Subject Classification: 34B15).