The influence of pentaamminerhodium(III) on the1H n.m.r. spectra and pyrrole pKas of coordinated imidazoles and pyrazoles

Summary The following [(NH₃)₅RhLH]Cl₃ salts were preparedvia the [(NH₃)₅Rh(O₃SCF₃)](O₃SCF₃)₂ synthetic route; LH=1-methylimidazole (1CH₃imH), 2-methylimidazole (2CH₃imH), 4-methylimidazole (4CH₃imH), 5-methylimidazole(5CH₃imH), and pyrazole (pyzH). pK_a's at 25.0°C were determined for [(NH₃)₅RhLH]³⁺ complexes as follows: 2CH₃imH, 10.4±0.1; 5CH₃imH/4CH₃imH isomer mixture, 10.3±0.1; pyzH, 6.54±0.05. The influence on the pK_a's of imidazoles is dominated by withdrawal of the rhodium(III) centre and may be compensated by the presence of ring methylation by only 0.5log units for cobalt(III) and rhodium(III) derivatives, compared to 1.3 units for the -withdrawing ruthenium(III) centre. In the case of the -acceptor pyrazole ring, [(NH₃)₅Rh]³⁺ is observed to serve as a slight -donor and raises the pK_a above the cobalt(III) analogue. The¹H n.m.r. spectra of [(NH₃)₅RhLH]³⁺ complexes of the substituted imidazoles and pyrazole exhibit a deshielding order. C–2H>C–5H>C–4H for imidazoles and C–3H>C–5H>C–4H for pyrazole, as do their cobalt(III) analogues. The magnitude of values (=_{free L}-_complex) are virtually the same as in the cobalt(III) systems which shows that TIP influences are unimportant compared to ring rehybridization in estabilishing chemical shifts for both the cobalt(III) and rhodium(III) complexes. The imidazolato and pyrazolato complexes exhibit resonances upfield of the respective substituted imidazole or pyrazole complex in keeping with more negative charge on the rings; the influence is largest at C–2H of imidazolates and C–3H of pyrazolate.     

Self-assembly in palladium(II) and platinum(II) chemistry: the biomimetic approach

The self-assembly of complex cationic structures by combination of cis-blocked square planar palladium(II) or platinum(II) units with bis(pyridyl) ligands having bridging amide units has been investigated. The reactions have yielded dimers, molecular triangles, and polymers depending primarily on the geometry of the bis(pyridyl) ligand. In many cases, the molecular units are further organized in the solid state through hydrogen bonding between amide units or between amide units and anions. The molecular triangle [Pt(3)(bu(2)bipy)(3)(mu-1)(3)](6+), M = Pd or Pt, bu(2)bipy = 4,4'-di-tert-butyl-2,2'-bipyridine, and 1 = N-(4-pyridinyl)isonicotinamide, stacks to give dimers by intertriangle NH.OC hydrogen bonding. The binuclear ring complexes [[Pd(LL)(mu-2)](2)](CF(3)SO(3))(4), LL = dppm = Ph(2)PCH(2)PPh(2) or dppp = Ph(2)P(CH(2))(3)PPh(2) and 2 = NC(5)H(4)-3-CH(2)NHCOCONHCH(2)-3-C(5)H(4)N, form transannular hydrogen bonds between the bridging ligands. The complexes [[Pd(LL)(mu-3)](2)](CF(3)SO(3))(4), LL = dppm or dppp, L = PPh(3), and 3 = N,N'-bis(pyridin-3-yl)-pyridine-2,6-dicarboxamide, and [[Pd(LL)(mu-4)](2)](CF(3)SO(3))(4), LL = dppm, dppp, or bu(2)bipy, L = PPh(3), and 4 = N,N'-bis(pyridin-4-yl)-pyridine-2,6-dicarboxamide, are suggested to exist as U-shaped or square dimers, respectively. The ligands N,N'-bis(pyridin-3-yl)isophthalamide, 5, or N,N'-bis(pyridin-4-yl)isophthalamide, 6, give the complexes [[Pd(LL)(mu-5)](2)](CF(3)SO(3))(4) or [[Pd(LL)(mu-6)](2)](CF(3)SO(3))(4), but when LL = dppm or dppp, the zigzag polymers [[Pd(LL)(mu-6)](x)](CF(3)SO(3))(2)(x) are formed. When LL = dppp, a structure determination shows formation of a laminated sheet structure by hydrogen bonding between amide NH groups and triflate anions of the type NH-OSO-HN.     

First total synthesis of a natural product containing a chiral,beta-diketone: synthesis and stereochemical reassignment of siphonarienedione and siphonarienolone

The first total syntheses of siphonarienolone and siphonarienedione are described. The development of a stereoselective synthesis of beta-diketones facilitated the synthesis of the latter compound. The synthesis of the structures proposed for the natural products afforded compounds whose spectral data did not match those of the natural products. However, the synthesis of compounds isomeric to the proposed structures at C(4) and C(5) afforded compounds identical to the natural products, thereby reassigning the stereochemistry of the natural products.     

Substitution reactions of [Ru(dppe)(CO)(H(2)O)(3)][OTf](2)

The labile nature of the coordinated water ligands in the organometallic aqua complex [Ru(dppe)(CO)(H(2)O)(3)][OTf](2) (1) (dppe = Ph(2)PCH(2)CH(2)PPh(2); OTf = OSO(2)CF(3)) has been investigated through substitution reactions with a range of incoming ligands. Dissolution of 1 in acetonitrile or dimethyl sulfoxide results in the facile displacement of all three waters to give [Ru(dppe)(CO)(CH(3)CN)(3)][OTf](2) (2) and [Ru(dppe)(CO)(DMSO)(3)][OTf](2) (3), respectively. Similarly, 1 reacts with Me(3)CNC to afford [Ru(dppe)(CO)(CNCMe(3))(3)][OTf](2) (4). Addition of 1 equiv of 2,2'-bipyridyl (bpy) or 4,4'-dimethyl-2,2'-bipyridyl (Me(2)bpy) to acetone/water solutions of 1 initially yields [Ru(dppe)(CO)(H(2)O)(bpy)][OTf](2) (5a) and [Ru(dppe)(CO)(H(2)O)(Me(2)bpy)][OTf](2) (6a), in which the coordinated water lies trans to CO. Compounds 5a and 6a rapidly rearrange to isomeric species (5b, 6b) in which the ligated water is trans to dppe. Further reactivity has been demonstrated for 6b, which, upon dissolution in CDCl(3), loses water and coordinates a triflate anion to afford [Ru(dppe)(CO)(OTf)(Me(2)bpy)][OTf] (7). Reaction of 1 with CH(3)CH(2)CH(2)SH gives the dinuclear bridging thiolate complex [[(dppe)Ru(CO)](2)(mu-SCH(2)CH(2)CH(3))(3)][OTf] (8). The reaction of 1 with CO in acetone/water is slow and yields the cationic hydride complex [Ru(dppe)(CO)(3)H][OTf] (9) via a water gas shift reaction. Moreover, the same mechanism can also be used to account for the previously reported synthesis of 1 upon reaction of Ru(dppe)(CO)(2)(OTf)(2) with water (Organometallics 1999, 18, 4068).     

Towards a system for the systematic structural study of intermolecular interactions in crystals of transition metal complexes

Pseudo-macrocyclic complexes of copper(II), and in one instance nickel(II), incorporating the bidentate ligands methyl N-(4-oxo-5,5-diphenyl-4,5-dihydro-1H-imidazol-2-yl)imidocarbamate and N,N-dimethyl-N'-(4-oxo-5,5-diphenyl-4,5-dihydro-1H-imidazol-2-yl)guanidine are reported and their X-ray structures compared with those previously reported for related complexes of two N-(4-oxo- 5,5-diphenyl-4,5-dihydro-1H-imidazol-2-yl)alkanimidamides. A feature of these complexes is that they are capable of forming hydrogen bonded chains or chains in which adjacent complexes are linked by phenyl 'embraces'. Changes in supramolecular structure arising from small changes in ligand structure or on crystallisation from different solvents are also discussed.     

Fused quinoline heterocycles VI: Synthesis of 5H‐1‐thia‐3,5,6‐triazaaceanthrylenes and 5H‐1‐thia‐3,4,5,6‐tetraazaaceanthrylenes

Ethyl 3‐amino‐4‐chlorothieno[3,2‐c]quinoline‐2‐carboxylate ( 4 ) is a versatile synthon, prepared by reacting an equimolar amount of 2,4‐dichloroquinoline‐3‐carbonitrile ( 1 ) with ethyl mercaptoacetate ( 2 ). Ethyl 5‐alkyl‐5H‐1‐thia‐3,5,6‐triazaaceanfhrylene‐2‐carboxylates 9a‐c , novel perianellated tetracyclic heteroaro‐matics, were prepared by refluxing 4 with excess of primary amines 7a‐c to yield the corresponding amino‐thieno[3,2‐c]quinolines 8a‐c . Subsequent reaction with an excess of triethyl orthoformate (TEO) furnished 9a‐c . Reaction of 4 with TEO in Ac₂O at reflux, gave the simple acetylated compounds, thieno[3,2‐c]‐quinolines 12 and 13 . Refluxing 4 with benzylamine ( 7d ) gave 10 , and subsequent treatment with TEO gave the tetracyclic compound 11 . Refluxing 13 with an excess of alkylamines 7a‐d gave the fhieno[3,2‐c]quino‐lines 15 . Refluxing the aminothienoquinolines 8b with an excess of triethyl orthoacetate gave thieno[3,2‐c]quinoline 17 , while heating with Ac₂O gave 18 and 19 , with small amounts of 16 . Reaction of 8a,b with ethyl chloroformate and phenylisothiocyanate generated the new 1‐thia‐3,5,6‐triazaaceanthrylenes 20a,b and 21a,b , respectively. Diazotization of 8a‐c afforded the novel tetracyclic ethyl 5‐alkyl‐5H‐1‐fhia‐3,4,5,6‐tetraazaaceanthrylene‐2‐carboxylates 22a‐c in good yields.     

Dititanium complexes of preorganized binucleating bis(amidinates)

Four different dianionic bis(amidinate) ligands ((iPr)L(DBF)(2)(-), (tBu,Et)L(DBF)(2)(-), (iPr)L(Xan)(2)(-), (tBu,Et)L(Xan)(2)(-)) featuring rigid dibenzofuran (DBF) and 9,9-dimethylxanthene (Xan) backbones have been used to prepare several new dititanium complexes. Reaction of the free-base bis(amidines) (LH(2)) with 2 equiv of Ti(NMe(2))(4) forms the hexaamido derivatives (iPr)L(DBF)Ti(2)(NMe(2))(6) (1), (tBu,Et)L(DBF)Ti(2)(NMe(2))(6) (2), (iPr)L(Xan)Ti(2)(NMe(2))(6) (3), and (tBu,Et)L(Xan)Ti(2)(NMe(2))(6) (4) in good yields. Compound 4, which features an unsymmetrically substituted bis(amidinate) ligand, was isolated as an 8:1 mixture of rotational diastereomers with C(2) and C(s)() symmetry, respectively. The two diastereomers interconvert upon heating, and at equilibrium the C(2) isomer is preferred thermodynamically by 0.2 kcal/mol. Compound 3 reacts with excess Me(3)SiCl in toluene to form the mixed amido-chloride derivative (iPr)L(Xan)Ti(2)(NMe(2))(2)Cl(4) (5) in low-moderate yield. Alternatively, 5 is also prepared by reaction of (iPr)L(Xan)H(2) with 2 equiv of Ti(NMe(2))(2)Cl(2) in good yield. Compound 3 reacts with CO(2) to form the red carbamate derivative (iPr)L(Xan)Ti(2)(NMe(2))(4)(O(2)CNMe(2))(2) (6) in moderate yield. Infrared data for 6 indicates bidentate coordination of the carbamate ligands. Metathesis reaction of (iPr)L(Xan)Li(2) with 2 equiv of CpTiCl(3) affords (iPr)L(Xan)Ti(2)Cp(2)Cl(4) (7) in moderate yield. Reduction of 7 with 1% Na amalgam in toluene solution affords the paramagnetic dititanium(III) complex (iPr)L(Xan)Ti(2)Cp(2)Cl(2) (8) in good yield. Structural studies reveal that 8 features two bridging chloride ligands. Reaction of the free-base bis(amidines) with 2 equiv of CpTiMe(3) forms the red sigma-alkyl derivatives (iPr)L(DBF)Ti(2)Cp(2)Me(4) (9), (tBu,Et)L(DBF)Ti(2)Cp(2)Me(4) (10), and (iPr)L(Xan)Ti(2)Cp(2)Me(4) (11) in good yields. Structural data are presented for compounds 4, 5, 8, and 9.     

Accelerated screening of phage-display output with alkaline phosphatase fusions

When using multiple targets and libraries, selection of affinity reagents from phage-displayed libraries is a relatively time-consuming process. Herein, we describe an automation-amenable approach to accelerate the process by using alkaline phosphatase (AP) fusion proteins in place of the phage ELISA screening and subsequent confirmation steps with purified protein. After two or three rounds of affinity selection, the open reading frames that encode the affinity selected molecules (i.e., antibody fragments, engineered scaffold proteins, combinatorial peptides) are amplified from the phage or phagemid DNA molecules by PCR and cloned en masse by a Ligation Independent Cloning (LIC) method into a plasmid encoding a highly active variant of E. coli AP. This time-saving process identifies affinity reagents that work out of context of the phage and that can be used in various downstream enzyme linked binding assays. The utility of this approach was demonstrated by analyzing single-chain antibodies (scFvs), engineered fibronectin type III domains (FN3), and combinatorial peptides that were selected for binding to the Epsin N-terminal Homology (ENTH) domain of epsin 1, the c-Src SH3 domain, and the appendage domain of the gamma subunit of the clathrin adaptor complex, AP-1, respectively.     

Mapping the influence of molecular structure on rates of electron transfer using direct measurements of the electron spin-spin exchange interaction

The spin-spin exchange interaction, 2J, in a radical ion pair produced by a photoinduced electron transfer reaction can provide a direct measure of the electronic coupling matrix element, V, for the subsequent charge recombination reaction. We have developed a series of dyad and triad donor-acceptor molecules in which 2J is measured directly as a function of incremental changes in their structures. In the dyads the chromophoric electron donors 4-(N-pyrrolidinyl)- and 4-(N-piperidinyl)naphthalene-1,8-dicarboximide, 5ANI and 6ANI, respectively, and a naphthalene-1,8:4,5-bis(dicarboximide) (NI) acceptor are linked to the meta positions of a phenyl spacer to yield 5ANI-Ph-NI and 6ANI-Ph-NI. In the triads the same structure is used, except that the piperidine in 6ANI is replaced by a piperazine in which a para-X-phenyl, where X = H, F, Cl, MeO, and Me(2)N, is attached to the N' nitrogen to form a para-X-aniline (XAn) donor to give XAn-6ANI-Ph-NI. Photoexcitation yields the respective 5ANI(+)-Ph-NI(-), 6ANI(+)-Ph-NI(-), and XAn(+)-6ANI-Ph-NI(-) singlet radical ion pair states, which undergo subsequent radical pair intersystem crossing followed by charge recombination to yield (3)NI. The radical ion pair distances within the dyads are about 11-12 A, whereas those in the triads are about approximately 16-19 A. The degree of delocalization of charge (and spin) density onto the aniline, and therefore the average distance between the radical ion pairs, is modulated by the para substituent. The (3)NI yields monitored spectroscopically exhibit resonances as a function of magnetic field, which directly yield 2J for the radical ion pairs. A plot of ln 2J versus r(DA), the distance between the centroids of the spin distributions of the two radicals that comprise the pair, yields a slope of -0.5 +/- 0.1. Since both 2J and k(CR), the rate of radical ion pair recombination, are directly proportional to V(2), the observed distance dependence of 2J shows directly that the recombination rates in these molecules obey an exponential distance dependence with beta = 0.5 +/- 0.1 A(-)(1). This technique is very sensitive to small changes in the electronic interaction between the two radicals and can be used to probe subtle structural differences between radical ion pairs produced from photoinduced electron transfer reactions.