Molecular orbital predictions of the vibrational frequencies of some molecular ions

Recent spectroscopic advances have led to the first determinations of infrared vibration-rotation bands of polyatomic molecular ions. These initial detections were guided by ab initio predictions of the vibrational frequencies. The calculations reported here predict the vibrational frequencies of additional ions which are candidates for laboratory analysis. Vibrational frequencies of neutral molecules computed at three levels of theory, HF/3-21G, HF/6-31G*, and MP2/6-31G*, were compared with experiment and the effect of scaling was investigated to determine how accurately vibrational frequencies could be predicted. For 92% of the frequencies examined, uniformly scaled HF/6-31G* vibrational frequencies were within 100 cm-1 of experiment with a mean absolute error of 49 cm-1. This relatively simple theory thus seems suitable for predicting vibrational frequencies to guide laboratory spectroscopic searches for ions in the infrared. Hence, the frequencies of 30 molecular ions, many with astrochemical significance,were computed. They are CH2+, CH3+, CH5+, NH2+, NH4+, H3O+, H2F+, SiH2+, PH4+, H3S+, H2Cl+, C2H+, classical C2H3+, nonclassical C2H3+, nonclassical C2H5+, HCNH+, H2CNH2+, H3CNH3+, HCO+, HOC+, H2CO+, H2COH+, H3COH2+, H3CFH+, HN2+, HO2+, C3H+, HOCO+, HCS+, and HSiO+.     

Oral aminolevulinic acid induces protoporphyrin IX fluorescence in psoriatic plaques and peripheral blood cells

Photodynamic therapy (PDT) with topical aminolevulinic acid (ALA) has been shown in previous studies to improve psoriasis. However, topical ALA-PDT may not be practical for the treatment of extensive disease. In order to overcome this limitation we have explored the potential use of oral ALA administration in psoriatic patients. Twelve patients with plaque psoriasis received a single oral ALA dose of 10, 20 or 30 mg/kg followed by measurement of protoporphyrin IX (PpIX) fluorescence in the skin and circulating blood cells. Skin PpIX levels were determined over time after ALA administration by the quantification of the 635 nm PpIX emission peak with in vivo fluorescence spectroscopy under 442 nm laser excitation. Administration of ALA at 20 and 30 mg/kg induced preferential accumulation of PpIX in psoriatic as opposed to adjacent normal skin. Peak fluorescence intensity in psoriatic and normal skin occurred between 3 and 5 h after the administration of 20 and 30 mg/kg, respectively. Ratios of up to 10 for PpIX fluorescence between psoriatic versus normal skin were obtained at the 30 mg/kg dose of ALA. Visible PpIX fluorescence was also observed on normal facial skin, and nonspecific skin photosensitivity occurred only in patients who received the 20 or 30 mg/kg doses. PpIX fluorescence intensity was measured in circulating blood cells by flow cytometry. PpIX fluorescence was higher in monocytes and neutrophils as compared to CD4+ and CD8+ T lymphocytes. PpIX levels in these cells were higher in patients who received higher ALA doses and peaked between 4 and 8 h after administration of ALA. There was only a modest increase in PpIX levels in circulating CD4+ and CD8+ T lymphocytes. In conclusion oral administration of ALA induced preferential accumulation of PpIX in psoriatic plaques as compared to adjacent normal skin suggesting that PDT with oral ALA should be further explored for the treatment of psoriasis.     

Polyurethane cationomers. I. Structure–properties relationships

Polyurethane (PU) cationomers have been synthesized by quaternizing tertiary amine-containing linear polyurethanes using different quaternizers containing acid groups. The effect of chemical structure of PU cationomers on the physical properties was studied. The mechanical properties of PU cationomers were improved with decreasing molecular weight of poly(caprolactone) glycol, and increasing concentration of quaternary ammonium. Decreasing the carbon number in the alkyl group of the N-alkyl diethanol-amine chain-extenders, and using rigid symmetrical diisocyanates, the mechanical properties of the PU cationomers were increased. The effects of these factors on the glass transition temperature of PU cationomers were also examined. The mechanical properties of the PU cationomers decreased by immersion in water and recovered after removal of the water.     

Raman spectroscopy in combination with background near-infrared autofluorescence enhances the in vivo assessment of malignant tissues

The diagnostic ability of optical spectroscopy techniques, including near-infrared (NIR) Raman spectroscopy, NIR autofluorescence spectroscopy and the composite Raman and NIR autofluorescence spectroscopy, for in vivo detection of malignant tumors was evaluated in this study. A murine tumor model, in which BALB/c mice were implanted with Meth-A fibrosarcoma cells into the subcutaneous region of the lower back, was used for this purpose. A rapid-acquisition dispersive-type NIR Raman system was employed for tissue Raman and NIR autofluorescence spectroscopic measurements at 785-nm laser excitation. High-quality in vivo NIR Raman spectra associated with an autofluorescence background from mouse skin and tumor tissue were acquired in 5 s. Multivariate statistical techniques, including principal component analysis (PCA) and linear discriminant analysis (LDA), were used to develop diagnostic algorithms for differentiating tumors from normal tissue based on their spectral features. Spectral classification of tumor tissue was tested using a leave-one-out, cross-validation method, and the receiver operating characteristic (ROC) curves were used to further evaluate the performance of diagnostic algorithms derived. Thirty-two in vivo Raman, NIR fluorescence and composite Raman and NIR fluorescence spectra were analyzed (16 normal, 16 tumors). Classification results obtained from cross-validation of the LDA model based on the three spectral data sets showed diagnostic sensitivities of 81.3%, 93.8% and 93.8%; specificities of 100%, 87.5% and 100%; and overall diagnostic accuracies of 90.6%, 90.6% and 96.9% respectively, for tumor identification. ROC curves showed that the most effective diagnostic algorithms were from the composite Raman and NIR autofluorescence techniques.     

Analytical theory of gamma-encoded double-quantum recoupling sequences in solid-state nuclear magnetic resonance

Many important double-quantum recoupling techniques in solid-state NMR are classified as being gamma-encoded. This means that the phase of the double-quantum effective Hamiltonian, but not its amplitude, depends on the third Euler angle defining the orientation of the molecular spin system in the frame of the magic-angle-spinning rotor. In this paper, we provide closed analytical solutions for the dependence of the powder-average double-quantum-filtered signal on the recoupling times, within the average Hamiltonian approximation for gamma-encoded pulse sequences. The validity of the analytical solutions is tested by numerical simulations. The internuclear distance in a (13)C(2)-labelled retinal is estimated by fitting the analytical curves to experimental double-quantum data.     

The mass-mobility correlation redux: The conformational landscape of anhydrous biomolecules

Structural separations on the basis of gas-phase ion mobility-mass spectrometry are increasingly used for the analysis of complex biological samples. As a tool to elucidate biomolecular structure, ion mobility-mass spectrometry methods are unique in that direct molecular structural information is obtained for all resolved species, largely irrespective of the complexity of the sample. Computational approaches are used to interpret and discern structural details consistent with the empirical results. To a first approximation, correlations of mobility with mass allow for qualitative identification of the molecular class to which a particular species belongs. These correlations allow simultaneous characterization of different classes of biomolecules, which provides a means for combining omics measurements, such as lipidomics, proteomics, glycomics, and metabolomics, in the same analysis. Examination of the correlation of fine structure reveals that specific structural motifs, chemical functionality, chemical connectivity, and composition may also be determined, depending on the specific biomolecular class. Mapping the coarse and fine structure in ion mobility-mass spectrometry conformation space measurements provides an atlas for interpretation and discovery in complicated spectra.     

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