Kaempferol glycosides in the flowers of carnation and their contribution to the creamy white flower color

Three flavonol glycosides were isolated from the flowers of carnation cultivars 'White Wink' and 'Honey Moon'. They were identified from their UV, MS, 1H and 13C NMR spectra as kaempferol 3-O-neohesperidoside, kaempferol 3-O-sophoroside and kaempferol 3-O-glucosyl-(1 --> 2)-[rhamnosyl-(1 --> 6)-glucoside]. Referring to previous reports, flavonols occurring in carnation flowers are characterized as kaempferol 3-O-glucosides with additional sugars binding at the 2 and/or 6-positions of the glucose. The kaempferol glycoside contents of a nearly pure white flower and some creamy white flower lines were compared. Although the major glycoside was different in each line, the total kaempferol contents of the creamy white lines were from 5.9 to 20.9 times higher than the pure white line. Thus, in carnations, kaempferol glycosides surely contribute to the creamy tone of white flowers.     

Incipient structural and vibrational relaxation process of photolyzed carbonmonoxy myoglobin: statistical analysis by perturbation ensemble molecular dynamics method

The incipient structural and vibrational energy relaxation process of photolyzed carbonmonoxy myoglobin was analyzed by the perturbation ensemble molecular dynamics (PEMD) method, in which many pairs of perturbed and unperturbed MD simulations are executed for ensemble-averaging to obtain statistically significant results by canceling out thermal fluctuations. First, we have shown that the experimentally reported anisotropic expansion can be detected within a picosecond after photolysis. The good agreement between the experimental and computational results indicates that the PEMD method can predict legitimately those changes driven by perturbations even if the changes might be subtle and smaller than thermal fluctuations. Second, the structural relaxation including the ??clamshell rotation?? in E and F helices was successfully analyzed. The high time resolution analysis has clarified the incipient structural dynamics on a subpicosecond timescale: the clamshell rotation starts at His64, Val68, and His93 following both the heme doming and the dissociated CO ligand collision. Third, the vibrational energy relaxation from the heme to the globin matrix is elucidated not only temporally but also spatially. This is the first ??thorough?? report of the spacetime-resolved excess kinetic energy redistribution of photolyzed MbCO in the globin matrix with a statistically significant precision, ±1?K. The incipient anisotropic vibrational relaxation occurs clearly within a picosecond in the direction perpendicular to the heme plane by the ??through-bond?? and ??through-projectile?? pathways, and the isotropic relaxation then follows by the ??through-space?? pathway. Finally, it is concluded that the PEMD method is a powerful tool to understand the incipient relaxation process driven by the perturbation.     

Novel Z-selective head-to-head dimerization of terminal alkynes catalyzed by lanthanide half-metallocene complexes

Various terminal alkynes have been cleanly dimerized into the corresponding head-to-head (Z)-enynes by use of the half-metallocene lutetium alkyl complexes Me2Si(C5Me4)(NAr)Lu(CH2SiMe3)(THF) (Ar = Ph, C6H3Me2-2,6, C6H2Me3-2,4,6) as catalysts. Aromatic C-Cl, C-Br, and C-I bonds, which are known to be extremely susceptible to reductive cleavage by transition metals, survived in the present reactions. The corresponding dimeric alkynide species [Me2Si(C5Me4)(NAr)Lu(mu-CCR)]2 are thought to be the true catalysts, some of which have been isolated and structurally characterized. These alkynide species were thermally stable and soluble at the reaction temperatures (80-110 degrees C), but they precipitated upon cooling to room temperature after completion of the reaction. Therefore, this catalyst system works homogeneously but can be separated and reused, thus constituting the first example of a recyclable catalyst system for the dimerization of terminal alkynes and also the first example of (Z)-selective head-to-head dimerization of aromatic terminal alkynes.     

Production of polyacrylonitrile particles by precipitation polymerization in supercritical carbon dioxide

Polyacrylonitrile particles were produced by precipitation polymerization of acrylonitrile (AN) without any colloidal stabilizer in supercritical carbon dioxide as a polymerization medium at about 30 MPa for 24 h at 65 °C at different initiator concentrations (0.8–45.2 mmol/l) and at different AN concentrations (10–40% w/v). An increase in the initiator concentration led to increases in the conversion and in the degree of coagulation and to a decrease in the molecular weight. At AN concentration of 20% w/v, micron-sized, relatively monodisperse polyacrylonitrile particles with clean and uneven surfaces were produced.     

THE CONFORMATIONAL ANALYSIS AND PHOTOISOMERIZATION OF RETINOCHROME ANALOGS WITH POLYENALS

Abstract— 3, 7-Dimethyl-2, 4, 6, 8, 10-dodecapentaenal was synthesized for reconstitution of the retinochrome analog. Its opsin shift was 1000 cm ¹ smaller than that of native retinochrome, whose chromophore contains the same number of double bonds. The conformational change from 6-s-trans to 6-s-cis , as figured in a retinal molecule, plays an important role in the formation of the retinochrome analog, based on the estimation of opsin shifts for retinal analogs locked in the 6-s conformation. Thus the conformation of the 6–7 single bond in the native retinochrome was suggested to be 6 -cis . Analysis of the circular dichroic spectra of retinochrome analogs revealed that the 6-s conformation is independent of the appearance of the β-band. The stereoselectivity in the photoisomerization of the retinal analogs by a retinochrome template depends on the hydrophobic binding in the region of the β-ionone ring.     

Reactive oligomers. I. Preparation and polymerization of ethylene glycol bis(methyl fumarate)

Ethylene glycol bis(methyl fumarate) (EGBMF) was prepared as a new type of divinyl compound and reactive oligomer: a needle crystal, m.p. 104.5°C. Homopolymerization of EGBMF was carried out in dioxane with 0.1 mol/L AIBN at [M] = 1 mol/L and 60°C; the rate of polymerization was estimated to be 4.44 × 10^?6 mol/L s in a good agreement with diethyl fumarate (DEF). The cyclization constant K_c was obtained as 1.64 mol/L, being rather low compared with diallyl oxalate which is 1,9-diene having two ester groups analogous to EGBMF. Gelatin occurred at about 35% conversion. Finally, the copolymerization of EGBMF (M₁) with diallyl phthalate (DAP) (M₂) is tentatively explored with the intention of the improvement of allyl resins in mechanical properties; remarkable rate enhancement was observed for copolymerization. The monomer reactivity ratios were estimated to be r₁ = 0.96 and r₂ = 0.025, the r₁ value being reduced compared with the DEF-DAP copolymerization system. These results are discussed from the standpoint of steric effect on the polymerization of fumarate as an internal olefin.     

Polymerization of tetraallyl ammonium chloride

The radical polymerization of tetraallyl ammonium chloride (TAAC) was carried out in water using azo-initiator as compared to that of diallyl dimethyl ammonium chloride (DADMAC); the rate of polymerization was quite low for TAAC, around one-third of DADMAC. Kinetic discussion revealed the importance of degradative chain transfer in the polymerization of TAAC. The cyclopolymerizability of TAAC was estimated kinetically as the ability of 5-membered monocyclic radical to form a bicyclic ring, giving the cyclization constant of 21 mol/L at [M] = 2 mol/L. Gelation occurred at around 20% conversion.     

Studies on the mechanism for stereoisomerization of 1-zirconacyclopent-3-yne compounds

The stereoisomerization of 2,5-disubstituted 1-zirconacyclopent-3-yne compounds, stable five-membered cycloalkynes, has been studied with regard to the mechanism. The bimetallic complex of 1,4-bis(trimethylsilyl)butatriene was synthesized and structurally characterized, although it seems unimportant for the stereoisomerization reactions. The isomerization of trans-1,1-bis(η⁵-cyclopentadienyl)-2,5-bis(trimethylsilyl)-1-zirconacyclopent-3-yne 2a into the cis-form in benzene-d₆ solution were observed using ¹H NMR spectroscopy at 50 °C in various concentrations. The reaction was first order with respect to trans-2a. This ruled out the possibility that a bimetallic complex was responsible for the isomerization. A kinetic isotope effect was observed (k_H/k_D = 1.8), suggesting that C–H activation is involved in the rate-determining step. A mechanism via hydrogen elimination from the complex of η⁴-π,π-coordination mode is proposed.     

On the induced‐fit mechanism of substrate‐enzyme binding structures of nylon‐oligomer hydrolase

We present a detailed computational investigation of the induced‐fit motion in a nylon‐oligomer hydrolase (NylB) upon substrate binding. To this aim, we resort on the recently introduced parallel cascade selection molecular dynamics approach, allowing for an accelerated access to the set of conformational changes from an open‐ to a closed‐state structure to form the enzyme‐substrate complex in a specific induce‐fit mechanism. The structural investigation is quantitatively complemented by free energy analyses within the umbrella sampling algorithm accompanied by weighted histogram analysis. We find that the stabilization free energy is about 1.4 kcal/mol, whereas the highest free energy barrier to be overcome is about 2.3 kcal/mol. Conversely, the energetic contribution for the substrate binding is about 20 kcal/mol, as estimated from Generalized Born/Surface Area. This means that the open‐close induced‐fit motion could occur frequently once the substrate binds to the open state of NylB. © 2014 Wiley Periodicals, Inc.