Noise Analysis of Duplicated Data on Microarrays Using Mixture Distribution Modeling

We propose a technique for estimating gene expression values for duplicated data on cDNA microarrays. In the scatter plots, the distribution is constructed from a mixture of normal two-dimensional distributions, which represent fluctuations in gene expression values due to noise. An expectation-maximization (EM) algorithm is used for estimating the modeling parameters. The probability that duplicated data is shifted by noise is calculated using Bayesian estimation. Six data sets of rice cDNA microarray assays were used to test the proposed technique. Genes in the data sets were subjected to clustering based on probability of true value. Clustering successfully identified candidate genes regulated by circadian rhythms in rice.     

Studies on sialic acids. XIII. Isolation of 3-deoxy-D-glycero-D-galacto-2-nonulopyranosonic acid (KDN) from chum salmon, Oncorhynchus keta

A method for analysis of 3-deoxy-D-glycero-D-galacto-2-nonulopyranosonic acid (KDN) by high-performance liquid chromatography (HPLC) with a strongly basic anion-exchange resin was developed. The method was applied to detect free KDN in water used to rinse of fertilized eggs of chum salmon, Oncorhynchus keta. Furthermore, KDN was isolated from the water as a fully protected derivative.     

Spin-oriented projectile fragments: The first application tog-factor measurements

Ejectile nuclei in the fragmentation of intermediate-energy heavy-ion projectiles were found to be largely spin polarized. The observed polarization as a function of the outgoing momentum was nicely explained by a simple kinematical argument based on the participant-spectator model of projectile fragmentation. The measurements extended to cover several different targets, incident energies, exit channels, and emission angles revealed that substantial polarization shows up widely in projectile fragmentation reactions. Furthermore, this polarization exhibits an interesting behavior which may be interpreted as a manifestation of a gradual change in the deflection angle from positive to negative values as the energy increases and/or the target-Z decreases. The present polarization results also suggests various applications of spin polarized radioactive beams. As the first example of such an application, we present a recent result on theg-factor measurements on neutron-rich nuclei.     

Generation of 2-Carboethoxyethylzinc iodide and 3-carboethoxypropylzinc iodide and their application to the synthesis of γ- and δ-keto esters

2-Carboethoxyethylzinc iodide and 3-carboethoxypropylzinc iodide are generated by the reaction of the corresponding iodoesters with Zn-Cu couple and utilized for the palladium catalyzed coupling reaction with acid chloride to quantitatively provide gamma- and delta- keto esters, respectively.     

Thermal decomposition of propyne and allene in shock waves

Propyne (p-C₃H₄) or allene (a-C₃H₄) mixtures, highly diluted with Ar, were heated to the temperature range 1200–1570 K at pressures of 1.7–2.6 atm behind reflected shock waves. The thermal decompositions of propyne and allene were studied by both measuring the profiles of the IR emission at 3.48 μm or 5.18 μm and analyzing the concentrations of reacted gas mixtures. The mechanism and the rate constant expressions were discussed from both the profiles and the concentrations of reactant and products obtained. The rate constant expressions for reactions, (1) p-C₃H₄ → a-C₃H₄, (?1) a-C₃H₄ → p-C₃H₄, and (5) p-C₃H₄ + H → CH₃ + C₂H₂ were evaluated.     

The correlation between molecular weight and antitumor activity of galactosaminoglycan (CO-N) from Cordyceps ophioglossoides

A galactosaminoglycan (CO-N) obtained by ultrasonication from a protein-bound polysaccharide SN-C, which was isolated from Cordyceps ophioglossoides culture, has a direct cytotoxicity against tumor cells (Ohmori et al., Chem. Pharm. Bull., 37, 1019 (1989). High performance liquid chromatographic analysis revealed that CO-N shows a broad molecular weight distribution with an average molecular weight of 33000. A potent antitumor activity of CO-N was observed in the higher-molecular-weight fraction on gel filtration, and the low-molecular-weight fraction below 6600 showed a weak activity. However, the depolymerized CO-N (ca. 5500) obtained by further ultrasonication of the original CO-N still retained the antitumor activity of CO-N against Ehrlich ascitic carcinoma or MM46 solid mammary carcinoma.