Nonadiabatic coupling and diabatic electronic population dynamics on 11A2 and 11B1 states of ozone molecule

In this work, we examine nonadiabatic population dynamics for 1¹B₁ and 1¹A₂ states of ozone molecule (O₃). In O₃, two lowest singlet excited states, ¹A₂ and ¹B₁, can be coupled. Thus, population transfer between them occurs through the seam involving these two states. At any point of the seam (conical intersection), the Born-Oppenheimer approximation breaks down, and it is necessary to investigate nonadiabatic dynamics. We consider a linear vibronic coupling Hamiltonian model and evaluate vibronic coupling constant, diabatic frequencies for three modes of O₃, bilinear and quadratic coupling constants for diabatic potentials, displacements, and Huang-Rhys coupling constants using ab initio calculations. The electronic structure calculations have been performed at the multireference configuration interaction and complete active space with second-order perturbation theory with a full-valence complete active space self-consistent field methods and augmented Dunning's standard correlation-consistent-polarized quadruple zeta basis set to determine ab initio potential energy surfaces for the ground state and first two excited states of O₃, respectively. We have chosen active space comprising 18 electrons distributed over 12 active orbitals. Our calculations predict the linear vibronic coupling constant 0.123 eV. We have obtained the population on the 1¹B₁ and 1¹A₂ excited electronic states for the first 500 fs after photoexcitation.     

Probing Gallate-Mediated Selectivity and High-Affinity Binding of Epigallocatechin Gallate: a Way-Forward in the Design of Selective Inhibitors for Anti-apoptotic Bcl-2 Proteins

Selective inhibition is a key focus in the design of chemotherapeutic compounds that can abrogate the oncogenic activities of anti-apoptotic Bcl-2 proteins. Although recent efforts have led to the development of highly selective BH3 mimetics, setbacks such as toxicities have limited their use in cancer therapy. Epigallocatechingallate (EGCG) has been widely reported to selectively inhibit Bcl-2 and Bcl-xL compared to other green tea phenols due to its gallate group. Herein, we investigate the interaction dynamics of EGCG at the hydrophobic grooves of Bcl-2 and Bcl-xL and the consequential effects on their BH4 domains. Arg143 and Asp108 (Bcl-2), and Glu96 and Tyr195 (Bcl-xL) formed high-affinity hydrogen interactions with the gallate group while non-gallate groups of EGCG formed weak interactions. EGCG-bound proteins showed systemic perturbations of BH4 domains coupled with the burial of crucial surface-exposed residues such as Lys17 (Bcl-2) and Asp11 (Bcl-xL); hence, a distortion of non-canonical domain interactions. Interactions of gallate group of EGCG with key hydrophobic groove residues underlie EGCG selectivity while concurrent BH4 domain perturbations potentiate EGCG inhibitory activities. Findings will aid the optimization and design of selective inhibitors that could suppress anti-apoptotic activities of Bcl2-family proteins with minimal toxicities.

     

Morphine Sensing by a Green Modified Molecularly Imprinted Poly L‐Lysine/Sodium Alginate‐activated Carbon/Glassy Carbon Electrode Based on Computational Design

A different molecularly imprinted composite film with the exploit of computational design is synthesized. The proposed composite is used for electrode modification to determine morphine. The ratio of monomer to template in optimum condition was obtained 4. The modification of the electrode was achieved by electropolymerizing L‐lysine in the presence of morphine on the surface of sodium alginate and activated carbon (SA‐AC) on glassy carbon electrode (GCE). The SA‐AC composite with special surface area suits for making sensitive sensors. Morphine showed an anodic peak in buffer solution of phosphate (pH=6.0) on MIP/SA‐AC/GCE. The optimization of the practical factors on the response and electrochemical behavior of template morphine on the modified electrode were precisely surveyed. The DPV outcomes exhibit high sensitivity for morphine detection within 0.1–1000.0 μM and limit of detection as 48 nM (S/N=3). The application of this disposable sensor in the case of urine samples was quite satisfactory.     

Biological evaluation of 9-(1H-Indol-3-yl) xanthen-4-(9H)-ones derivatives as noncompetitive α-glucosidase inhibitors: kinetics and molecular mechanisms

Structural Chemistry - The α-Glucosidase plays a key role in attenuation of postprandial hyperglycemia in diabetic patients. In this study, a class of 9-(1H-Indol-3-yl) xanthen-4-(9H)-ones...     

Polyvinyl amine as a modified and grafted shell for Fe3O4 nanoparticles: As a strong solid base catalyst for the synthesis of various dihydropyrano[2,3-c]pyrazole derivatives and the Knoevenagel condensation

In this work, we reported one-step deposition of polyacrylamide on nano-magnetite surface via a simple and in situ polymerization of acryl amide to form n-Fe₃O₄/PAM nanocomposite. The amide (–CONH₂) groups could be converted easily to amine (–NH₂) groups through Hofmann degradation to introduce n-Fe₃O₄/PVAm as a highly efficient heterogeneous base catalyst. The obtained organic-inorganic nanocomposite exhibited high catalytic activity for the solvent-free syntheses of various dihydropyrano[2,3-c]pyrazole derivatives and the Knoevenagel condensation in high to excellent yields and in the following, a plausible mechanism for the synthesis of them has been proposed. Because of the polymer layer coated Fe₃O₄ nanoparticles, the catalyst has many catalytic units, and acceptable thermal stability and recyclability. Titration, FT-IR, SEM, TGA, VSM, and XRD analysis were used for characterization of the catalyst. Also, the nanocomposite can be easily recovered by a magnetic field and reused up to 9 times without distinct deterioration in catalytic activity.     

Thermal and thermomechanical behavior of Moroccan Boufeggous variety date seeds

Journal of Thermal Analysis and Calorimetry - In this work, the physicochemical and thermomechanical characteristics of date seeds were examined during their pyrolysis under inert atmosphere from...     

Toward higher extraction and enrichment factors via a double‐reservoirs microfluidic device as a micro‐extractive platform

In this study, firstly, a double‐reservoir and switchable prototype of a micro‐chip along with the respective holders were fabricated. A cyclic desorption process using microliter volume of organic solvent was adopted to prevent any outdoor contamination. As extractive phases, two identical sheets of electrospun polyamide/polypyrrole/titania nanofibers were synthesized using core–shell electro‐spinning technique and utilized for determination of memantine in plasma samples. Field emission scanning electron microscopy images showed a high degree of porosity and homogeneity throughout the sheet structure. Also, energy dispersive X‐ray analysis confirmed the presence of titania, while the recorded Fourier transform infrared spectra proved the chemical structures of the polymeric mats. The incorporation of titania as well as polypyrrole in the composition of polyamide nanofibers improved both mechanical stability and extraction capacity of the extractive phase and therefore facilitated the extraction/desorption process. The limits of detection and quantification were 0.01 and 0.04 ng/mL, respectively. In addition, the interday and intraday precisions were lower than 6.7% (n = 3). The linearity was in the range of 0.14–75.00 ng/mL, while recoveries were between 94.1 and 98.4% with the regression coefficient of 0.9987.     

Tailoring particle shape for enhancing the homogeneity of powder mixtures:Experimental study and DEM modelling

The effect of particle shape modification on the segregation reduction of enzyme granules in laundry detergent powder mixtures was investigated,both experimentally and computationally using Deseret Element Method(DEM).The shape of modified enzyme particles was in such a way that the large and dense enzyme particles were layered by other fine particles in the detergent powder,by means of a process known in the literature as“seeded granulation”.It is found that the homogeneity of modified enzyme particles could be improved significantly comparing to the original spherical enzyme particles in powder mixtures.Overall,the results of this research demonstrated that the segregation-induced properties of the dense/spherical enzyme particles could be lowered by altering their shape,which could enable the enzyme particles to behave almost similar to other ingredients during the pile formation process.     

Design and synthesis of new imidazo[1,2-b]pyrazole derivatives,in vitro α-glucosidase inhibition,kinetic and docking studies

Molecular Diversity - A new series of imidazo[1,2-b]pyrazole derivatives 4a–o was designed, synthesized, and screened for in vitro α-glucosidase inhibitory activity. All compounds showed...     

Unveiling of Pyrimidindinones as Potential Anti-Norovirus Agents—A Pharmacoinformatic-Based Approach

The RNA-dependent RNA polymerase (RdRp) receptor is an attractive target for treating human norovirus (HNV). A computer-aided approach like e-pharmacophore, molecular docking, and single point energy calculations were performed on the compounds retrieved from the Development Therapeutics Program (DTP) AIDS Antiviral Screen Database to identify the antiviral agent that could target the HNV RdRp receptor. Induced-fit docking (IFD) results showed that compounds ZINC1617939, ZINC1642549, ZINC6425208, ZINC5887658 and ZINC32068149 bind with the residues in the active site-B of HNV RdRp receptor via hydrogen bonds, salt bridge, and electrostatic interactions. During the molecular dynamic simulations, compounds ZINC6425208, ZINC5887658 and ZINC32068149 displayed an unbalanced backbone conformation with HNV RdRp protein, while ZINC1617939 and ZINC1642549 maintained stability with the protein backbone when interacting with the residues. Hence, the two new concluding compounds discovered by the computational approach can be used as a chemotype to design promising antiviral agents aimed at HNV RdRp.