Self‐Assembly of Coiled Coils in Synthetic Biology: Inspiration and Progress

Biological self‐assembly is very complex and results in highly functional materials. In effect, it takes a bottom‐up approach using biomolecular building blocks of precisely defined shape, size, hydrophobicity, and spatial distribution of functionality. Inspired by, and drawing lessons from self‐assembly processes in nature, scientists are learning how to control the balance of many small forces to increase the complexity and functionality of self‐assembled nanomaterials. The coiled‐coil motif, a multipurpose building block commonly found in nature, has great potential in synthetic biology. In this review we examine the roles that the coiled‐coil peptide motif plays in self‐assembly in nature, and then summarize the advances that this has inspired in the creation of functional units, assemblies, and systems.     

The dynamics of coupled planar rigid bodies. II. Bifurcations,periodic solutions,and chaos

We give a complete bifurcation and stability analysis for the relative equilibria of the dynamics of three coupled planar rigid bodies. We also use the equivariant Weinstein-Moser theorem to show the existence of two periodic orbits distinguished by symmetry type near the stable equilibrium. Finally we prove that the dynamics is chaotic in the sense of Poincaré-Birkhoff-Smale horseshoes using the version of Melnikov's method suitable for systems with symmetry due to Holmes and Marsden.     

Covalently Binding Atomically Designed Au9 Clusters to Chemically Modified Graphene

Atomic‐resolution transmission electron microscopy was used to identify individual Au₉ clusters on a sulfur‐functionalized graphene surface. The clusters were preformed in solution and covalently attached to the surface without any dispersion or aggregation. Comparison of the experimental images with simulations allowed the rotational motion, without lateral displacement, of individual clusters to be discerned, thereby demonstrating a robust covalent attachment of intact clusters to the graphene surface.     

Horseshoes in perturbations of Hamiltonian systems with two degrees of freedom

This paper concerns Hamiltonian and non-Hamiltonian perturbations of integrable two degree of freedom Hamiltonian systems which contain homoclinic and periodic orbits. Our main example concerns perturbations of the uncoupled system consisting of the simple pendulum and the harmonic oscillator. We show that small coupling perturbations with, possibly, the addition of positive and negative damping breaks the integrability by introducing horseshoes into the dynamics.Research partially supported by ARO Contract DAAG-29-79-C-0086 and by NSF Grants ENG 78-02891 and MCS-78-06718     

Stability of relative equilibria. Part I: The reduced energy-momentum method

Communicated by P.Holmes     

Maximal hypersurfaces and foliations of constant mean curvature in general relativity

We prove theorems on existence, uniqueness and smoothness of maximal and constant mean curvature compact spacelike hypersurfaces in globally hyperbolic spacetimes. The uniqueness theorem for maximal hypersurfaces of Brill and Flaherty, which assumed matter everywhere, is extended to spacetimes that are vacuum and non-flat or that satisfy a generic-type condition. In this connection we show that under general hypotheses, a spatially closed universe with a maximal hypersurface must be Wheeler universe; i.e. be closed in time as well. The existence of Lipschitz achronal maximal volume hypersurfaces under the hypothesis that candidate hypersurfaces are bounded away from the singularity is proved. This hypothesis is shown to be valid in two cases of interest: when the singularities are of strong curvature type, and when the singularity is a single ideal point. Some properties of these maximal volume hypersurfaces and difficulties with Avez' original arguments are discussed. The difficulties involve the possibility that the maximal volume hypersurface can be null on certain portions; we present an incomplete argument which suggests that these hypersurfaces are always smooth, but prove that an a priori bound on the second fundamental form does imply smoothness. An extension of the perturbation theorem of Choquet-Bruhat, Fischer and Marsden is given and conditions under which local foliations by constant mean curvature hypersurfaces can be extended to global ones is obtained.     

The Hamiltonian structure of general relativistic perfect fluids

We show that the evolution equations for a perfect fluid coupled to general relativity in a general lapse and shift, are Hamiltonian relative to a certain Poisson structure. For the fluid variables, a Lie-Poisson structure associated to the dual of a semi-direct product Lie algebra is used, while the bracket for the gravitational variables has the usual canonical symplectic structure. The evolution is governed by a Hamiltonian which is equivalent to that obtained from a canonical analysis. The relationship of our Hamiltonian structure with other approaches in the literature, such as Clebsch potentials, Lagrangian to Eulerian transformations, and its use in clarifying linearization stability, are discussed.Research supported in part by NSF grant MCS 81-08814(A02)Research supported in part by NSF grant MCS 81-07086