Calcium Ion-Induced Stabilization and Refolding of Agkisacutacin from <Emphasis Type="Italic">Agkistrodon Acutus</Emphasis> Venom Studied by Fluorescent Spectroscopy

Agkisacutacin isolated from the venom of Agkistrodon acutus is a coagulation factor IX / coagulation factor X-binding protein with marked anticoagulant- and platelet-modulating activities. Ca²⁺ ion-induced stabilization and refolding of Agkisacutacin have been studied by following fluorescent measurements. Ca²⁺ ions not only increase the structural stability of agkisacutacin against GdnHCl denaturation, but also induce its refolding. The GdnHCl-induced unfolding of the apo-agkisacutacin and the purified agkisacutacin is a single-step process with no detectable intermediate state. Ca²⁺ ions play an important role in the stabilization of the structure of agkisacutacin. Ca²⁺-stabilized agkisacutacin exhibits higher resistance to GdnHCl denaturation than the apo-agkisacutacin. It is possible to induce refolding of the unfolded apo-agkisacutacin merely by adding 1 mM Ca²⁺ ions without changing the concentration of the denaturant. The kinetic result of Ca²⁺-induced refolding provides evidences for that agkisacutacin consists of at least two refolding phases and the first phase of Ca²⁺-induced refolding should involve the formation of the compact Ca²⁺-binding site regions, and subsequently, the protein undergoes further conformational rearrangements to form the native structure.     

Flexible carbon nanostructures with electrospun nickel oxide as a lithium-ion battery anode

Carbon nanostructures (CNS) with high electrical conductivity and unique branched structure of carbon nanotubes combined with NiO nanofibers (NFs) were used as anode for lithium-ion batteries. CNS works as a framework substrate for the anodic conversion reaction of nickel oxide (NiO). Electrochemical performance and behavior of CNS/NiO anodes is compared with the conventional carbon (C)/NiO anodes. CNS/NiO NF-based anode retains high specific capacity under different current densities compared to C/NiO anode. Moreover, specific capacity as high as 450 mAh/g for CNS/NiO NF anode is observed compared to only 90 mAh/g for C/NiO NFs using a current density of 500 mA/g after 500 cycles. This improved performance is attributed to the highly conductive network of CNS leading to efficient charge transfer. The high porosity, electrical conductivity as well as the branched and networked nature of CNS reveal to be of critical importance to allow the electrochemical conversion reactions.     

Allocating operating funding in the public sector and the newsvendor problem

Public sector managers, particularly those at the highest level of government, tend to view lapsed (or unused) funds at the end of a fiscal year as a consequence of poor management and/or inadequate financial controls. The aim of this paper is to challenge this view. We show that the planning environment in the public sector is in essence the classical Newsvendor Problem. This simple model argues that lapsed funds are a direct consequence of a manager doing his job properly; that is, lapsed funds occur from time to time when a manager is maximizing value for the organization. An extension of the model shows that allowing low-value year-end spending has an undesirable effect on the value of spending during the year and this suggests a role for a strong audit function for year-end spending.     

A self-tuning heuristic for the design of communication networks

This paper addresses the design of communication networks that has a large application area. The problem is to design a minimum cost network subject to a given reliability level. Complexity of the problem is twofold: (1) finding a minimum-cost network topology that every pair of nodes can communicate with each other and (2) computing overall reliability to provide the reliability constraint. Over the last two decades, metaheuristic algorithms have been widely applied to solve this problem due to its NP-hardness. In this study, a self-tuning heuristic (STH), which is a new approach free from parameter tuning, is applied to the design of communication networks. Extensive computational results confirm that STH generates superior solutions to the problem in comparison to some well-known local search metaheuristics, and also more sophisticated metaheuristics proposed in the literature. The practical advantage of STH lies in both its effectiveness and simplicity in application to the design problem.     

Conceptual modelling and the project process in real simulation projects: a survey of simulation modellers

A survey was used to obtain information on the processes and methods used by simulation experts in real projects. The 102 survey respondents answered questions about their most recent simulation project. This paper presents some of the survey results, focussing mainly on conceptual modelling and the pattern of time allocation to different topics. There are a wide range of findings that include the modellers making changes to the initial conceptual model during subsequent tasks in most of the projects usually by adding complexity, model coding taking on average about twice the time of other topics, and the topics generally occurring in single blocks of time (at the resolution of the survey data collection) but with considerable overlaps. The results give an insight into the way experts approach simulation projects and their problem solving strategies. A potential application is in training novice modellers, particularly in developing ‘craft skills’. The results also provide an empirical basis for further research, especially in conceptual modelling.     

Existence of solutions for semilinear elliptic boundary value problems on arbitrary open sets

We show the existence of a weak solution of a semilinear elliptic Dirichlet problem on an arbitrary open set Ω. We make no assumptions about the open set Ω and very mild regularity assumptions on the semilinearity f, plus a coerciveness assumption which depends on the optimal Poincaré–Steklov constant λ₁. The proof is based on Schaefer’s fixed point theorem applied to a sequence of truncated problems. We state a simple uniqueness result. We also generalize the results to Robin boundary conditions [17].     

A quantal Tolman temperature

The conventional Tolman temperature based on the assumption of the traceless condition of energy-momentum tensor for matter fields is infinite at the horizon if Hawking radiation is involved. However, we note that the temperature associated with Hawking radiation is of relevance to the trace anomaly, which means that the traceless condition should be released. So, a trace anomaly-induced Stefan-Boltzmann law is newly derived by employing the first law of thermodynamics and the property of the temperature independence of the trace anomaly. Then, the Tolman temperature is quantum-mechanically generalized according to the anomaly-induced Stefan-Boltzmann law. In an exactly soluble model, we show that the Tolman factor does not appear in the generalized Tolman temperature which is eventually finite everywhere, in particular, vanishing at the horizon. It turns out that the equivalence principle survives at the horizon with the help of the quantum principle, and some puzzles related to the Tolman temperature are also resolved.     

Liouville mode in gauge/gravity duality

We establish solutions corresponding to AdS\(_4\) static charged black holes with inhomogeneous two-dimensional horizon surfaces of constant curvature. Depending on the choice of the 2D constant curvature space, the metric potential of the internal geometry of the horizon satisfies the elliptic wave/elliptic Liouville equations. We calculate the charge diffusion and transport coefficients in the hydrodynamic limit of gauge/gravity duality and observe the exponential suppression in the diffusion coefficient and in the shear viscosity-per-entropy density ratio in the presence of an inhomogeneity on black hole horizons with planar, spherical, and hyperbolic geometry. We discuss the subtleties of the approach developed for a planar black hole with inhomogeneity distribution on the horizon surface in more detail and find, among others, a trial distribution function, which generates values of the shear viscosity-per-entropy density ratio falling within the experimentally relevant range. The solutions obtained are also extended to higher-dimensional AdS space. We observe two different DC conductivities in 4D and higher-dimensional effective strongly coupled dual media and formulate conditions under which the appropriate ratio of different conductivities is qualitatively the same as that observed in an anisotropic strongly coupled fluid. We briefly discuss ways of how the Liouville field could appear in condensed matter physics and outline prospects of further employing the gauge/gravity duality in CMP problems.     

Coulomb screening in graphene with topological defects

We analyze the screening of an external Coulomb charge in gapless graphene cone, which is taken as a prototype of a topological defect. In the subcritical regime, the induced charge is calculated using both the Green’s function and the Friedel sum rule. The dependence of the polarization charge on the Coulomb strength obtained from the Green’s function clearly shows the effect of the conical defect and indicates that the critical charge itself depends on the sample topology. Similar analysis using the Friedel sum rule indicates that the two results agree for low values of the Coulomb charge but differ for the higher strengths, especially in the presence of the conical defect. For a given subcritical charge, the transport cross-section has a higher value in the presence of the conical defect. In the supercritical regime we show that the coefficient of the power law tail of polarization charge density can be expressed as a summation of functions which vary log periodically with the distance from the Coulomb impurity. The period of variation depends on the conical defect. In the presence of the conical defect, the Fano resonances begin to appear in the transport cross-section for a lower value of the Coulomb charge. For both sub and supercritical regime we derive the dependence of LDOS on the conical defect. The effects of generalized boundary condition on the physical observables are also discussed.     

What is a protein crystal? Can we apply the terminology of classical industrial crystallization to them?

The nature of protein crystals is discussed. Since protein crystals contain not only proteins but also other substances the usage of conventional terms (of industrial crystallization) of naming such crystals is questioned. The proof that there are other components than the protein itself in a protein crystal is given. It is suggested to use a procedure like in biotechnology to guarantee the production of the right protein crystals according to the PAT concept. It is suggested not to use other established names like “hydrates”, “solvates”, “but crystals for proteins since the definitions do not fit the nature of the protein crystals.