Determination of post-translational modifications of proteins by high-sensitivity, high-resolution Fourier transform ion cyclotron resonance mass spectrometry

The response of a cell to its extracellular environment is a multi-step process beginning with signal transduction that is governed by "subtle changes" often resulting in protein expression. Proteomics is the tracking of this protein expression. Post-translational modification (PTM) is a "subtle change" that has a major influence on signal transduction. Phosphorylation and glycosylation propagate signals by sequential, reversible modifications. High-sensitivity, high-resolution and multiple MS capabilities of Fourier transform ion cyclotron resonance mass spectrometry permit localization of the PTM(s) with electron-capture dissociation, and then structural determination of the PTM with infrared multiphoton dissociation.     

Dynamic behavior of potentiometric ammonia-sensing probes in samples of high osmolarity

Results are presented for potentiometric ammonia gas-sensors which show that the response times increase significantly with age of the sensor when ammonium picrate is used as internal electrolyte and the samples have greater osmolarities than the internal electrolyte solution. A build-up of ammonium picrate crystals on the inner side of the gas-permeable membrane is responsible for this increasein response time. The use of ammonium chloride as internal electrolyte provides constant response times indepent of sample osmotic strength, and is recommended as a means of ensuring that optimal dynamic response characteristics are maintained.     

On the role of solvent in complexation equilibria. I. The acid-base chemistry of some α,ω-diaminocarboxylic acids in water-dioxane mixed solvents

The macroscopic and microscopic acid-base chemistry of a series of α,ω-diaminocarboxylic acids, H₂N(CH₂)_nCH(NH₂)COOH [n=4, lysine (LYS);n=3, ornithine (ORN);n=2, 2,4-diaminobutyric acid (DAB);n=1, 2,3-diaminopropionic acid (DAP)], was determined in water and its binary mixtures with dioxane (20.5, 40.7, 60.7, and 80.5 mass % dioxane) using carbon-13 nuclear magnetic resonance spectroscopy. The macroscopic acid dissociation constants for the titration of the two ammonium groups decrease uniformly with increasing dioxane composition. The microscopic constants, however, which characterize the relative concentrations of the two tautomers of singly protonated amino acid (I and II) $$\begin{gathered} H_3 \mathop N\limits^ + (CH_2 )_n CHCOO^ - H_2 N(CH_2 )_n CHCOO^ - \hfill \\ || \hfill \\ NH_2 \mathop N\limits_ + H_3 \hfill \\ III \hfill \\ \end{gathered}$$ reveal that while tautomer I is favored in aqueous solution, tautomer II becomes more important with increasing dioxane composition for LYS and ORN. The relative concentrations of I and II remain unchanged with solvent composition for DAP. These results are explained in terms solute-solvent and solvent-solvent interactions.     

Unprecedented reversible migration of amide to schiff base ligands attached to tin: latent single-site initiators for lactide polymerization

In an unprecedented transformation, amide ligands are found to attack the imine carbon centers of tridentate Schiff base ligands attached to tin. The process is reversible, and the resultant (masked) amide species can be exploited as latent single-site initiators for the controlled polymerization of rac-lactide.     

Potential of electrophilic epoxide reactions for the monitoring of acid gases in the environment

Mineral and short-chain carboxylic acid vapours and NO(x) gases were reacted with cyclohexene oxide (1,2-epoxycyclohexane) to quantitatively produce specific, thermally stable cyclohexyl derivatives. Subsequent analysis of these derivatives by gas chromatography with mass spectroscopy and flame ionisation detection afforded a multi analyte method for the assay of these gaseous acidic atmospheric species. Derivatisation was found to be quantitative for the derivatives tested and the method highly sensitive (to 0.3 mg/m3 for a 30 l sample), accurate, precise and free from apparent interferences. The technique has been applied to "acid stack gases" and a number of other acid rich atmospheres and the results obtained show good agreement with the single analyte wet chemical determinations indicating that the approach has considerable potential as a routine analytical method for measuring such atmospheric pollutants. The high specificity of the reaction mechanism and its potential for the analysis of analyte mixtures is illustrated in the assay of nitric acid and its acid anhydride, dinitrogen pentoxide.     

Effects of Solar UVB Radiation on Growth, Flowering and Yield of Central and Southern European Maize Cultivars (Zea mays L.)

Abstract— Different cultivars of maize ( Zea mays L.) originating from Central and South Europe were grown from June to September 1994 for 16 weeks in two greenhouses covered with different UVB-absorbing (280–320 nm) plastic foils. Using the ambient UVB radiation level of a southern location (Portugal, 38.7°N) in one of the greenhouses as an enhanced radiation compared to the reduced radiation in the second greenhouse, an increase of about 12% of UVB was simulated. Six of the eight cultivars examined showed significant reductions in height of up to 18.9% at all developmental stages under increased UVB. In contrast to this, the fresh and dry weight as well as the leaf area was reduced under UVB only at early developmental stages, but with ongoing development the UVB stressed plants caught up. The total content of absorbing compounds of the maize cultivars was completely unaffected by UVB. A flowering delay up to a maximum of 5 days was observed under higher UVB in several cultivars. Probably due to this delay in the cob development the yield decreased to 27.7% under higher UVB at the first harvest after 12 and 14 weeks, whereas at the second harvest after 14 and 16 weeks yield reduction levelled off.     

1,2-Bis(2,5-diphenylphospholano)methane, a new ligand for asymmetric hydrogenation

1,2-Bis(2,5-diphenylphospholano)methane (Ph-BPM) has been prepared in good yield from 2,5-trans-diphenylphospholane-borane adduct. Rhodium and ruthenium complexes of this ligand have been prepared and their usefulness in asymmetric hydrogenation has been investigated. [Ph-BPM Rh(COD)]BF₄ showed high activity and selectivity for itaconate and dehydroamino acid hydrogenation. Ph-BPM RuCl₂(DPEN) was effective for imine hydrogenation.     

Scope and mechanism of palladium-catalyzed amination of five-membered heterocyclic halides

Detailed studies have been conducted to determine the activity of palladium catalysts for the amination of five-membered heterocyclic halides and to determine the factors that control the scope of this reaction. Palladium-catalyzed aminations of the electron-rich furanyl, thiophenyl, and indolyl halides and of the related 2-halogenated thiazoles, benzimidazole, and benzoxazole have been shown to occur with a subset of amines. Various combinations of palladium precursors and P(t)Bu(3) were tested as catalysts for reaction of 3-bromothiophene with N-methylaniline, and the fastest reactions occurred with the Pd(I) dimer, [PdBr(P(t)Bu(3))](2). The fastest aminations of thiazoles, benzimidazoles, and benzoxazoles occurred with the combination of palladium trifluoroacetate and P(t)Bu(3) as catalyst.     

Bridged peptide macrocycles as ligands for PDZ domain proteins

[reaction: see text] Conformationally constrained side chain-bridged cyclic peptides were prepared using bis-carboxylic acid ring spacers. These macrocyles were designed to inhibit protein-protein interactions mediated by the third PDZ domain (PDZ3) of a mammalian neuronal protein, PSD-95. Isothermal titration calorimetry (ITC) experiments measured dissociation constants in the low micromolar range. For each compound, the change in entropy (TdeltaS) of binding either is comparable in magnitude to the enthalpy change (deltaH) or is the predominant driving force for association.     

A structural and energetics analysis of the binding of a series of N-acetylneuraminic-acid-based inhibitors to influenza virus sialidase

Summary A molecular dynamics/energy-minimisation protocol has been used to analyse the structural and energetic effects of functional group substitution on the binding of a series of C4-modified 2-deoxy-2,3-didehydro-N-acetylneuraminic acid inhibitors to influenza virus sialidase. Based on the crystal structure of sialidase, a conformational searching protocol, incorporating multiple randomisation steps in a molecular dynamics simulation was used to generate a range of minimum-energy structures. The calculations were useful for predicting the number, location, and orientation of structural water molecules within protein-ligand complexes. Relative binding energies were calculated for the series of complexes using several empirical molecular modelling approaches. Energies were computed using molecular-mechanics-derived interactions as the sum of pairwise atomic nonbonded energies, and in a more rigorous manner including solvation effects as the change in total electrostatic energy of complexation, using a continuum-electrostatics (CE) approach. The CE approach exhibited the superior correlation with observed affinities. Both methods showed definite trends in observed and calculated binding affinities; in both cases inhibitors with a positively charged C4 substituent formed the tightest binding to the enzyme, as observed experimentally.This paper is based on a presentation given at the 14th Molecular Graphics and Modelling Society Conference, held in Cairns, Australia, August 27–September 1, 1995.Presently on a visiting postdoctoral fellowship in the Department of Biomolecular Structure, Glaxo Research & Development Ltd, Greenford, Middlesex UB6 OHE, U.K.