From Democritus to Schrödinger: a reflection on quantum molecular modeling

This review describes the saga of the atom and molecules, from the atomic concept as it was introduced 25 centuries ago by Leucippus and Democritus, to the modern Quantum Molecular Modeling. Quantum methods that have given rise to the contemporary Molecular Modeling are briefly presented. Chosen examples illustrate the performance and the predictions of Quantum Modeling in the following topics: conformational analysis, electrostatics, molecular spins and radicals, infrared and Raman spectra, thermochemistry, and electrophilicity properties derived from the molecular chemical potential.     

The DFT rationalization of exchange and anisotropy in one-dimensional d-p magnets: The [MnIII(porphyrin)][TCNE] case study

We report here numerical experiments, modeling and interpretations dealing with the magnetic interactions necessary for building nano-scale magnets in quasi-one-dimensional systems based on the assembling of [Mn(porphyrin)]⁺ magnetically anisotropic d units and TCNE-p-type spin carriers. The magnetic ordering and its coupling parameter are studied by Broken Symmetry DFT calculations for various model structures, allowing for the rationalization of geometry dependence of the effective exchange. The roles of the phenyl substituent, as well as of the basis set and the DFT functional used in the computation are discussed. The intrinsic anisotropy of these systems is studied in an original manner, extracting Ligand Field and Spin Orbit parameters by combined fits to non-relativistic and relativistic DFT calculations, allowing the explicit estimation of the Zero Field Splitting parameters.     

Micropolarity and microviscosity of Pluronics L62 and L64 core–shell aggregates in water at various concentrations and additives examined by absorption and fluorescence probes

The microstructure of aggregates formed in aqueous solutions of the triblock copolymers poly(ethylene oxide) (PEO)–poly(propylene oxide)–PEO, Pluronics L62 and L64, and the effect of additives (n-butanol, n-hexanol, and o-xylene) on the local polarity and viscosity were investigated using several absorption and fluorescence probes with different hydrophilic/hydrophobic trade-offs. The absorption probe was 2,2,6,6-tetramethylpiperidine-1-oxyl and the fluorescence probes pyrene (P), 1-anilinonaphthalene-8-sulfonic acid (ANS), 1,10-bis(1-pyrene) decane (PD), and N-[5-(dimethylamino)naphthalene-1-sulfonyl]hexadecylamine (Dansyl). The specific absorption and fluorescence parameters, sensitive to changes in micropolarity and microviscosity, were related to the hydration calibration curves carried out in homogeneous tetraethylene glycol/water mixtures. Thus, the effective local hydration of the molecular probe solubilized in the guest aggregate was quantified, and at the same time, the probe location is established with respect of the corona and core aggregate. The ANS and PD probes evidence differences in microviscosity and track the effect of the block copolymer structure and additive concentration on microviscosity.     

mer-[Fe III(bpca)(CN)3]-: a new low-spin iron(III) complex to build heterometallic ladder-like chains

The novel mononuclear complex PPh(4)-mer-[Fe(III)(bpca)(3)(CN)(3)].H(2)O (1) [PPh(4)(+) = tetraphenylphosphonium cation and bpca = bis(2-pyridylcarbonyl)amidate anion] and ladder-like chain compound [[Fe(III)(bpca)(micro-CN)(3)Mn(II)(H(2)O)(3)] [Fe(III)(bpca)(CN)(3)]].3H(2)O (2) have been prepared and characterized by X-ray diffraction analysis. Compound 1 is a low-spin iron(III) compound with three cyanide ligands in mer arrangement and a tridentate N-donor ligand building a distorted octahedral environment around the iron atom. Compound 2 is an ionic salt made up of cationic ladder-like chains [[Fe(III)(bpca)(micro-CN)(3)Mn(II)(H(2)O)(3)]](+) and uncoordinated anions [Fe(III)(bpca)(3)(CN)(3)](-). The magnetic properties of 2 correspond to those of a ferrimagnetic chain with significant intrachain antiferromagnetic coupling between the low-spin iron(III) centers and the high-spin manganese(II) cations. This compound exhibits ferrimagnetic ordering below 2.0 K.     

Identification and structural characterisation of carboxy-terminal polypeptides and antibody epitopes of Alzheimer's amyloid precursor protein using high-resolution mass spectrometry

Alzheimer's disease (AD) is the most common cause for human age-related dementia, characterised by formation of diffuse plaques in brain that are directly involved in AD pathogenesis. The major component of AD plaques is beta-amyloid, a 40 to 42 amino acid polypeptide derived from the amyloid precursor protein (APP) by proteolytic degradation involving the specific proteases, beta-and gamma-secretase acting at the N- and C- terminal cleavage site, respectively. In this study we have prepared polypeptides comprising the carboxy-terminal and transmembrane sequences of APP, by bacterial expression and chemical synthesis, as substrates for studying the C-terminal processing of APP and its interaction with the gamma-secretase complex. Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) was used as a major tool for structure analysis. Immunisation of transgenic mouse models of AD with Abeta42 has been recently shown to be effective to inhibit and disaggregate Abeta-fibrils, and to reduce AD-related neuropathology and memory impairments. However, the mechanism underlying these therapeutic effects has been as yet unclear. Using proteolytic epitope excision from immune complexes in combination with FT-ICR-MS, we identified the epitope recognised by the therapeutically active antibody as the N-terminal Abeta(4-10) sequence; this soluble, nontoxic epitope opens new lead structures for AD vaccine development. A monoclonal antibody (Jonas; JmAb) directed against the cytosolic APP domain was used in studies of APP biochemistry and metabolism. Here we report the identification of the epitope recognised by the JmAb, using the combination of epitope excision and peptide mapping by FT-ICR-MS. The epitope was determined to be located at the C-terminal APP(740-747) sequence; it was confirmed by ELISA binding assays and authentic synthetic peptides and will be an efficient tool in the development of new specific vaccines. These results demonstrate high-resolution FT-ICR-MS as a powerful method for characterising biochemical pathways and molecular recognition structures of APP.     

Single-chain magnet (NEt4)[Mn2(5-MeOsalen)2Fe(CN)6] Made of Mn(III)-Fe(III)-Mn(III) trinuclear single-molecule magnet with an S(T) = 9/2 spin ground state

The cyano-bridged trinuclear compound, (NEt(4))[Mn(2)(salmen)(2)(MeOH)(2)Fe(CN)(6)] (1) (salmen(2)(-) = rac-N,N'-(1-methylethylene)bis(salicylideneiminate)), reported previously by Miyasaka et al. (ref 19d) has been reinvestigated using combined ac and dc susceptibility measurements. The strong frequency dependence of the ac susceptibility and the slow relaxation of the magnetization show that 1 behaves as a single-molecule magnet with an S(T) = (9)/(2) spin ground state. Its relaxation time (tau) follows an Arrhenius law with tau(0) = 2.5 x 10(-)(7) s and Delta(eff)/k(B) = 14 K. Moreover, below 0.3 K, tau saturates around 470 s, indicating that quantum tunneling of the magnetization becomes the dominant process of relaxation. (NEt(4))[Mn(2) (5-MeOsalen)(2)Fe(CN)(6)] (2) (5-MeOsalen(2)(-) = N,N'-ethylenebis(5-methoxysalicylideneiminate)) is a heterometallic one-dimensional assembly made of the trinuclear [Mn(III)(SB)-NC-Fe(III)-CN-Mn(III)(SB)] (SB is a salen-type Schiff-base ligand) motif similar to 1. Compound 2 has two types of bridges, a cyano bridge (-NC-) and a biphenolate bridge (-(O)(2)-), connecting Mn(III) and Fe(III) ions and the two Mn(III) ions, respectively. Both bridges mediate ferromagnetic interactions, as shown by modeling the magnetic susceptibility above 10 K with g(av) = 2.03, J(Mn)(-)(Fe)/k(B) = +6.5 K, and J'/k(B) = +0.07 K, where J' is the exchange coupling between the trimer units. The dc magnetic measurements of a single crystal using micro-SQUID and Hall-probe magnetometers revealed a uniaxial anisotropy (D(T)/k(B) = -0.94 K) with an easy axis lying along the chain direction. Frequency dependence of the ac susceptibility and time dependence of the dc magnetization have been performed to study the slow relaxation of the magnetization. A mean relaxation time has been found, and its temperature dependence has been studied. Above 1.4 K, both magnetic susceptibility and relaxation time are in agreement with the dynamics described in the 1960s by R. J. Glauber for one-dimensional systems with ferromagnetically coupled Ising spins (tau(0) = 3.7 x 10(-)(10) s and Delta(1)/k(B) = 31 K). As expected, at lower temperatures below 1.4 K, the relaxation process is dominated by the finite-size chain effects (tau'(0) = 3 x 10(-)(8) s and Delta(2)/k(B) = 25 K). The detailed analysis of this single-chain magnet behavior and its two regimes is consistent with magnetic parameters independently estimated (J'and D(T)) and allows the determination of the average chain length of 60 nm (or 44 trimer units). This work illustrates nicely a new strategy to design single-chain magnets by coupling ferromagnetically single-molecule magnets in one dimension.     

Synthesis, crystal structures and magnetic properties of cyanide- and phenolate-bridged [M(III)NiII]2 tetranuclear complexes (M=Fe and Cr)

The binuclear complex NiII2L(H2O)2(ClO4)2(1) and the neutral tetranuclear bimetallic compounds [{M(III)(phen)(CN)4}2{NiII2L(H2O)2}].2CH3CN with M=Fe (2) and Cr (3)[H2L=11,23-dimethyl-3,7,15,19-tetraazatricyclo[19.3.1.1(9,13)]hexacosa-2,7,9,11,13(26),14,19,21(25),22,24-decaene-25,26-diol] have been synthesized and the structures of and determined by single crystal X-ray diffraction. and are isostructural compounds whose structure is made up of centrosymmetric binuclear cations [Ni2(L)(H2O)2]2+ and two peripheral [M(phen)(CN)4]- anions [M=Fe (2) and Cr (3)] acting as monodentate ligands towards the nickel atoms through one of their four cyanide nitrogen atoms. The environment of the metal atoms in 2 and 3 is six-coordinated: two phen-nitrogen and four cyanide-carbon atoms at the iron and chromium atoms and a water molecule, one cyanide-nitrogen and two phenolate-oxygens and two imine-nitrogens from the binucleating ligand L2- at the nickel atom build distorted octahedral surroundings. The values of the FeNi and CrNi separations through the single cyanide bridge are 5.058(1) and 5.174(2)A respectively, whereas the Ni-Ni distances across the double phenolate bridge are 3.098(2)(2) and 3.101(1) A (3). The magnetic properties of have been investigated in the temperature range 1.9-290 K. The magnetic behaviour of corresponds to that of an antiferromagnetically coupled nickel(II) dimer with J=-61.0(1) cm-1, the Hamiltonian being defined as H=-J S(A).S(B). An overall antiferromagnetic behaviour is observed for and with a low-lying singlet spin state. The values of the intramolecular magnetic couplings are J(Fe-Ni)=+17.4(1) cm-1 and J(Ni-Ni(a))=-44.4(1) cm-1 for and J(Cr-Ni)=+11.8(1) cm-1 and J(Ni-Ni(a))=-44.6(1) cm-1 for [H=-J(M-Ni)(S(M).S(Ni)+S(Ma).S(Nia))-J(Ni-Nia)S(Ni)S(Nia)]. Theoretical calculations using methods based on density functional theory (DFT) have been employed on in order to analyze the efficiency of the exchange pathways involved and also to substantiate the exchange coupling parameters.     

Microwave enhanced non-alkaline bleaching of mechanical pulps: A new solution to an old problem

Since the granting of our first US patent on microwave induced catalytic decomposition of PCBs some 18 years ago, microwave technology has slowly begun to attract some industrial attention in the last few years. There was no doubt that microwaves had been applied to facilitate the conventional bleaching process of wood pulps in the past but with little or no success. The myth that microwaves can be regarded and manipulated as a rapid heat source probably caused most of the failures of unsuccessful microwave applications. It is therefore necessary to understand the real potential of microwaves as an energy source and to identify the many critical electromagnetic properties of the load (chemical systems), before a final choice of a proper microwave system be designed and installed. In this preliminary report, we demonstrate the real potential of pulsed microwave radiation for non-alkaline bleaching of mechanical pulps. Typically, very high consistency TMP up to 93% can be treated by pulsed microwave in the order of 90 seconds with an average increase of 20 to 25 points in brightness.