Scanning Force Microscopy as Applied to Conformational Studies in Macromolecular Research

The modern state of SFM research on polymer nano‐objects including single chains is discussed in comparison with other similar high‐resolution microscopy techniques. The range of problems to be solved preferentially by SFM is highlighted. Promising methodology to describe quantitatively the morphology of macromolecular objects is proposed. The main benefits of this algorithm seem to be the apparent mathematical correctness as well as the possibility to estimate errors and the confidence of the numbers obtained. Special attention is paid to the dynamic observations of conformational transitions on a substrate in real time regime. This approach allows one to realise direct control of the adsorbed macromolecules by means of exposure to different vapours. Driving forces of the vapour‐induced reorganisation are discussed.

     

Metal substitution in a Lindqvist polyoxometalate leads to improved photocatalytic performance

The photochemical properties of homo- and heterometallic molybdate-based Lindqvist polyoxometalate clusters are investigated in a comparative study and it is shown that vanadium substitution can be used as a facile synthetic tool to optimize the visible light absorption and photocatalytic activity of the cluster. The mono-vanadium substituted unit, [VMo(5)O(19)](3-) shows light absorption up to 480 nm whereas the light absorption of the molybdate analogue [Mo(6)O(19)](2-) is mainly in the UV region below 400 nm. The electronic absorption properties of both clusters are further investigated using TD-DFT calculations which show that vanadium incorporation leads to the formation of low-energy O → V LMCT transitions. In comparative photochemical dye decomposition test reactions under UV and Vis irradiation, a higher reactivity is observed for [VMo(5)O(19)](3-) together with turnover numbers of more than 1600. In addition it is shown that under anaerobic conditions, the photoreaction proceeds faster than in the presence of oxygen, suggesting that oxygen acts as a quencher in one of the photoredox steps.     

Organometallic Pt precursor on graphite substrate: deposition from SC CO2, reduction and morphology transformation as revealed by SFM

Organometallic Pt precursor was deposited on model highly oriented pyrolytic graphite substrate from solutions in supercritical carbon dioxide. Morphology transformations during reduction process including real-time observations were studied by scanning force microscopy (SFM). We confirmed that SC CO₂ is a promising mediator in deposition process even for rather hydrophobic supports. SFM data show that thermal decomposition of the PtMe₂(COD) precursor with subsequent hydrogen post-treatment allows one to obtain rather pure and well-defined Pt nanoparticles with average height above a substrate level of 4.5 ± 0.6 nm.     

Hybrid coupled cluster and molecular dynamics approach: application to the excitation spectrum of cytosine in the native DNA environment

Evolution of the excited state energies of cytosine base in the native DNA environment was investigated using a hybrid coupled cluster and classical molecular dynamics approach. The time averaged excitation energies obtained with the variant of the completely renormalized equation-of-motion with singles, doubles, and non-iterative triples approach that includes a bulk of the correlation effects for excited states, are compared with the analogous calculations in the gas phase. Significant blue shifts for the two lowest singlet excitation energies can be observed as a result of the interaction of the quantum system with the surrounding environment.     

Asymptotic extrapolation scheme for large-scale calculations with hybrid coupled cluster and molecular dynamics simulations

In this paper we discuss a simple extrapolation scheme based on the asymptotic behavior of the electronic energies considered as functions of cutoff factor for orbital energies corresponding to virtual orbitals. The performance of this approach is illustrated in the context of large-scale dynamic simulations for excitation energies of the cytosine molecule in its native DNA environment. We demonstrate that the extrapolation errors are significantly smaller than the excitation-energy fluctuations, due to the fluctuating environment.     

Electronic coupling between heme electron-transfer centers and its decay with distance depends strongly on relative orientation

A method for calculating the electron-transfer matrix element V(RP) using density functional theory Kohn-Sham orbitals is presented and applied to heme dimers of varying relative orientation. The electronic coupling decays with increased iron separation according to V(RP) = V(0)(RP)exp(-beta r/2) with a distance dependence parameter beta approximately 2 A(-1) for hemes with parallel porphyrins and either 1.1 or 4.0 A(-1) when the porphyrin planes are perpendicular, depending on the alignment of the iron d(pi) orbital. These findings are used to interpret the observed orientation of the hemes in tetraheme redox proteins such as Flavocytochrome c(3) fumarate reductase (Ifc(3), PDB code 1QJD) of Shewanella frigidimarina, another flavocytochrome from the same bacterium (Fcc(3), 1E39) and a small tetraheme cytochrome of Shewanella oneidensis strain MR1 (1M1P). Our results show that shifting and rotating the hemes controls the adiabaticity of the three electron hopping steps.     

Molecular recognition of chloroform by divergent polymorphic transitions in tert-butylthiacalix[4]arene tetrasubstituted with N-(2-hydroxyethyl)carbamoylmethoxy groups in a lower rim

The genuine molecular recognition of chloroform by a tert-butylthiacalix[4]arene derivative was observed, where the host remembers the guest above its elimination point showing two polymorphic transitions with opposite heat effects.     

Reversible Photoswitching of a Spin‐Crossover Molecular Complex in the Solid State at Room Temperature

Spin‐crossover metal complexes are highly promising magnetic molecular switches for prospective molecule‐based devices. The spin‐crossover molecular photoswitches developed so far operate either at very low temperatures or in the liquid phase, which hinders practical applications. Herein, we present a molecular spin‐crossover iron(II) complex that can be switched between paramagnetic high‐spin and diamagnetic low‐spin states with light at room temperature in the solid state. The reversible photoswitching is induced by alternating irradiation with ultraviolet and visible light and proceeds at the molecular level.     

How to Switch Spin‐Crossover Metal Complexes at Constant Room Temperature

Spin‐crossover metal complexes represent a highly promising class of molecular switches, the diverse physicochemical properties of which can be reversibly changed by different physical and chemical stimuli. One of the most interesting and examined features of these materials is the change of magnetic properties by changing the temperature or by irradiation with light at low temperatures. However, most prospective applications of such complexes require functioning at room temperature. This Concept article provides an overview about how the switching of spin‐crossover metal complexes can be achieved at constant room temperature. The principles of switching by different physical and chemical methods in solution and in the solid state are presented in an easy‐to‐read form for nonspecialists. These are further supported and clarified by examples from the literature. The overview might also be interesting for experts that target spin‐crossover systems functioning at ambient conditions.