Diketopyrrolopyrrole J‐Aggregates Formed by Self‐Organization with DNA

Bis(2‐thienyl)diketopyrrolopyrrole with two Zn^II‐cyclens (ZnCyc‐DPP) was designed and synthesized to evaluate the selective binding of Zn^II‐cyclen with thymine base in single‐strand DNA as a tool for the construction of a highly ordered multichromophore system on DNAs. Through UV/Vis titrations, gel filtration chromatography, and circular dichroism spectroscopy, ZnCyc‐DPP formed J‐type DPP aggregates with oligo‐dT_n DNAs. The DPP aggregates absorbed on a gold electrode exhibited good photocurrent responses. The present results show that binding Zn^II‐cyclen–chromophore conjugates and thymine bases together is a powerful tool for preparing DNA‐templated multichromophoric systems with specific functions.     

Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates

A parallel algorithm for efficient calculation of the second derivatives (Hessian) of the conformational energy in internal coordinates is proposed. This parallel algorithm is based on the master/slave model. A master processor distributes the calculations of components of the Hessian to one or more slave processors that, after finishing their calculations, send the results to the master processor that assembles all the components of the Hessian. Our previously developed molecular analysis system for conformational energy optimization, normal mode analysis, and Monte Carlo simulation for internal coordinates is extended to use this parallel algorithm for Hessian calculation on a massively parallel computer. The implementation of our algorithm uses the message passing interface and works effectively on both distributed-memory parallel computers and shared-memory parallel computers. We applied this system to the Newton–Raphson energy optimization of the structures of glutaminyl transfer RNA (Gln-tRNA) with 74 nucleotides and glutaminyl-tRNA synthetase (GlnRS) with 540 residues to analyze the performance of our system. The parallel speedups for the Hessian calculation were 6.8 for Gln-tRNA with 24 processors and 11.2 for GlnRS with 54 processors. The parallel speedups for the Newton–Raphson optimization were 6.3 for Gln-tRNA with 30 processors and 12.0 for GlnRS with 62 processors. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1716–1723, 1998     

Is Cyanide Really a Strong‐Field Ligand?

Iron man or weakling? Ligand‐field strengths are conveniently expressed by the empirical spectrochemical series. Although cyanide has been deeply entrenched as a strong‐field ligand, a couple of recent examples cast doubt toward the position of this ligand, namely the high‐spin (S=2) states of [Cr^II(CN)₅]^3? and [Fe^II(tpp)(CN)]^?. tpp=meso‐tetraphenylporphinate.

     

The defect chemistry of La1−ΔMnO3+δ

The effects of oxygen reduction treatments on the magnetic properties of La-deficient manganites, La_1−ΔMnO_3+δ and Sr- and Ca-doped manganites, La_1−xM_xMnO_3+δ (M: Sr, Ca) have been investigated to confirm the contrasting oxygen reduction effects on the magnetization properties. It is found that oxygen reduction treatments in reduced oxygen pressures of 10³- for La_1−ΔMnO_3+δ result in a continuous change in the magnetization but the reduction treatments for La_1−xM_xMnO_3+δ result in a negligible change under the same reduction conditions. To interpret the contrasting behavior of the La-deficient manganites, several possible models have been discussed. Among the models, the most probable model is that vacancies generated by the La deficiency Δ are partially replaced by Δ₂(=Δ−Δ₁?Δ₁) Mn ions to give both La and Mn site vacancies according to the formula La_1−ΔV_ΔMnO_3+δ→{La_1−ΔMn_Δ2V_Δ1}{Mn_1−Δ2V_Δ2}O_3+δ. Details of thermodynamic basis of this model have been presented.     

Particle Size Effects in TEMPO‐Mediated Radical Polymerization of Styrene in Aqueous Miniemulsion

Summary: 2,2,6,6‐Tetramethylpiperidinyl‐1‐oxy (TEMPO)‐mediated radical polymerization of styrene in aqueous miniemulsion at 125 °C using sodium dodecylbenzenesulfonate and poly(vinyl alcohol), respectively, as colloidal stabilizers has been investigated. The particle size had a dramatic effect on the polymerization process. Decreasing particle size led to a markedly higher polymerization rate, but less control and a lower degree of livingness. For particles with diameters greater than approximately 170 nm, the polymerization behavior was essentially the same as in the corresponding bulk system. By varying the particle size within an appropriate range, it is possible to tune the polymerization such that the polymerization rate is increased while still maintaining reasonable control and livingness.

     

Novel drug delivery system of hollow mesoporous silica nanocapsules with thin shells: preparation and fluorescein isothiocyanate (FITC) release kinetics

Core-shell nanoparticles of Au@silica with a diameter of approximate 45–60 nm and wall thickness in range of 3–10 nm were synthesized by using 40 and 50 nm gold nanoparticles as the templates. The mesoporous particles are regulated by 3-aminopropyltrimethoxysilane addition. Hollow mesoporous silica nanocapsules (HMSNs) were prepared by using sodium cyanide to dissolve the gold cores. The characterization of Au@silica and HMSNs by transmission electronic microscope indicated that the silica shells were uniform and smooth, and also the porosity was proved by fluorescein isothiocyanate (FITC) release experiments. The ratio of hollow core to HMSNs is more than 70%. HMSNs were subsequently used as drug carrier to investigate FITC (as a model drug) release behaviors in vitro. Fluorescent spectrometry was performed to determine the release kinetics from the HMSNs. The release profiles are significantly different as compared with the control (free FITC), which show that HMSNs are good drug carriers to control drug release, and have high potential in therapeutic drugs delivery in future applications.     

Magnetite 3D colloidal crystals formed in the early solar system 4.6 billion years ago

Three-dimensional colloidal crystals made of ferromagnetic particles, such as magnetite (Fe(3)O(4)), cannot be synthesized in principle because of the strong attractive magnetic interaction. However, we discovered colloidal crystals composed of polyhedral magnetite nanocrystallites of uniform size in the range of a few hundred nanometers in the Tagish Lake meteorite. Those colloidal crystals were formed 4.6 billion years ago and thus are much older than natural colloidal crystals on earth, such as opals, which formed about 100 million years ago. We found that the size of each individual magnetite particle determines its morphology, which in turn plays an important role in deciding the packing structure of the colloidal crystals. We also hypothesize that each particle has a flux-closed magnetic domain structure, which reduces the interparticle magnetic force significantly.     

Effective momentum transfer cross section for excess electrons in liquid argon

The momentum-transfer cross section of excess electrons Q in liquid Ar (estimated on the assumption that the characteristic energy 3eD/2μ is equal to the mean agitation energy ge) is compared with the original momentum-transfer cross section Q₁ used for the calculation of D and μ. Differences between Q and Q₁ are discussed and comparisons made between 3eD/2μ and gE.     

Total syntheses of zaragozic acids A and C by a carbonyl ylide cycloaddition strategy

A carbonyl ylide cycloaddition approach to the squalene synthase inhibitors zaragozic acids A and C is described. The carbonyl ylide precursor 8 was synthesized starting from di-tert-butyl D-tartrate (47) via an eleven-step sequence involving the regioselective reduction of the mono-MPM (MPM=4-methoxybenzyl) ether 48 with LiBH4 and the diastereoselective addition of sodium tert-butyl diazoacetate to alpha-keto ester 10. The reaction of alpha-diazo ester 8 with 3-butyn-2-one (40) in the presence of a catalytic amount of [Rh2(OAc)4] gave the desired cycloadduct 59 as a single diastereomer. The dihydroxylation of enone 59 followed by sequential transformations permitted the construction of the fully functionalized 2,8-dioxabicyclo[3.2.1]octane core 5. Alkene 79 derived from 5 serves as a common precursor to zaragozic acids A (1) and C (2), since the elongation of the C1 alkyl side chain can be attained by olefin cross-metathesis, especially under the influence of Blechert's catalyst (85).     

Bay-area selective thermal [4+2] and [4+4] cycloaddition reactions of triply linked ZnII diporphyrin with o-xylylene

A triply linked ZnII diporphyrin underwent site-selective cycloaddition reactions with thermally generated o-xylylene to provide a triply linked porphyrin-chlorin hybrid and a triply linked chlorin dimer in moderate yields. The former product is a symmetry-allowed [4+2] cycloadduct, while the latter is a symmetry-forbidden [4+4] cycloadduct. Oxidation of the latter product with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) provided a triply linked diporphyrin fused with a benzocyclooctatriene segment. This oxidized product and above [4+2] cycloadduct were structurally characterized by single crystal X-ray diffraction analysis. The observed site-selectivity is considered to arise from the large MO coefficients at the bay-area in the LUMO of the triply linked diporphyrin. The anomalous thermal [4+4] cycloaddition may be ascribed to the highly conjugated and quite perturbed electronic properties of triply linked ZnII diporphyrin.