Comparative proteomic profiling of mammalian cell lysates using phosphopeptide microarrays

A library of 176 human phosphotyrosine-containing peptides was used to establish cell lysate binding profiles in a two colour microarray format. The resulting hits led to the pull-down and identification of biomarkers associated with cancer states.     

Study of lithium ion intercalation/de-intercalation into LiNi1/3Mn1/3Co1/3O2 in aqueous solution using electrochemical impedance spectroscopy

The mechanism of lithium ion intercalation/de-intercalation into LiNi_1/3Mn_1/3Co_1/3O₂ cathode material prepared by reactions under autogenic pressure at elevated temperatures method is investigated both in aqueous and non-aqueous electrolytes using electrochemical impedance spectroscopy (EIS) technique. In accordance with the results obtained an equivalent circuit is used to fit the impedance spectra. The kinetic parameters of intercalation/de-intercalation processes are evaluated with the help of the same equivalent circuit. The dependence of charge transfer resistance (R _ct), exchange current (I ₀), double layer capacitance (C _dl), Warburg resistance (Z _w), and chemical diffusion coefficient (D _Li+) on potential during intercalation/de-intercalation is studied. The behavior of EIS spectra and its potential dependence is studied to get the kinetics of the mechanism of intercalation/de-intercalation processes, which cannot be obtained from the usual electrochemical studies like cyclic voltammetry. The results indicate that intercalation and de-intercalation of lithium ions in aqueous solution follows almost similar mechanism in non-aqueous system. D _Li+ values are in the range of 10^?8 to 10^?14?cm²?s^?1 in aqueous 5?M LiNO₃ and that in non-aqueous 1?M LiAsF₆/EC+DMC electrolyte is in the order of 10^?12?cm²?s^?1 during the intercalation/de-intercalation processes. A typical cell LiTi₂ (PO4)₃/5?M LiNO₃/LiNi_1/3Mn_1/3Co_1/3O₂ is constructed and the cycling stability is compared to that with an organic electrolyte.     

Synthesis, characterization and antimicrobial investigation of mechanochemically processed silver doped ZnO nanoparticles

The application of nanomaterials has gained considerable momentum in various fields in recent years due to their high reactivity, excellent surface properties and quantum effects in the nanometer range. The properties of zinc oxide (ZnO) vary with its crystallite size or particle size and often nanocrystalline ZnO is seen to exhibit superior physical and chemical properties due to their higher surface area and modified electronic structure. ZnO nanoparticles are reported to exhibit strong bacterial inhibiting activity and silver (Ag) has been extensively used for its antimicrobial properties since ages. In this study, Ag doped ZnO nanoparticles were synthesized by mechanochemical processing in a high energy ball mill and investigated for antimicrobial activity. The nanocrystalline nature of zinc oxide was established by X-ray diffraction (XRD) studies. It is seen from the XRD data obtained from the samples, that crystallite size of the zinc oxide nanoparticles is seen to decrease with increasing Ag addition. Field emission scanning electron microscopy (FESEM) and transmission electron microscopy (TEM) data also supported the nanoparticle formation during the synthesis. The doped nanoparticles were subjected to antimicrobial investigation and found that both increase in Ag content and decrease in particle size contributed significantly towards antimicrobial efficiency. It was also observed that Ag doped ZnO nanoparticles possess enhanced antimicrobial potential than that of virgin ZnO against the studied microorganisms of Escherichia coli and Staphylococcus aureus.     

Can functionalized cucurbituril bind actinyl cations efficiently? A density functional theory based investigation

The feasibility of using cucurbituril host molecule as a probable actinyl cation binders candidate is investigated through density functional theory based calculations. Various possible binding sites of the cucurbit[5]uril host molecule to uranyl are analyzed and based on the binding energy evaluations, μ(5)-binding is predicted to be favored. For this coordination, the structure, vibrational spectra, and binding energies are evaluated for the binding of three actinyls in hexa-valent and penta-valent oxidation states with functionalized cucurbiturils. Functionalizing cucurbituril with methyl and cyclohexyl groups increases the binding affinities of actinyls, whereas fluorination decreases the binding affinities as compared to the native host molecule. Surprisingly hydroxylation of the host molecule does not distinguish the oxidation state of the three actinyls.     

Crystal structures of substituted imidazolidine derivatives

The crystal structures of isoxazole, 3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]methyl-5-phenyl-,N-oxide] (C₁₃H₁₃N₅O₃) (I), isoxazole,3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]-methyl-5-(4-methylphenyl)-,N-oxide] (C₁₄H₁₅N₅O₃) (II) and isoxazole, 3-[[dihydro-2-[(Z)-2-oxohyrazono]-1H-imidazol-1-(3H)-yl]-methyl-5-(2-methoxyphenyl)-,N-oxide] (C₁₄H₁₅N₅O₄) (III) have been determined by X-ray diffraction studies. The compound I, crystallized in triclinic space group with unit cell dimensions a = 7.2405(7) ?, b = 7.9936(8) ?, c = 11.6573(11) ?, α = 97.801(2)°, β = 90.884(2)°, γ = 96.250(2)° and Z = 2. Compound II crystallized in orthorhombic space group Pna2₁ with unit cell dimensions a = 10.1778(10) ?, b = 28.228(3) ?, c = 5.1206(5) ?, and Z = 4. Compound III crystallized in monoclinic space group P2₁/n with unit cell dimensions a = 7.8439(9) ?, b = 7.8544(9) ?, c = 23.534(3) ?, β = 99.464(2)° and Z = 4. For all three compounds, the five-membered imidazolidine ring adopts an envelope conformation. The crystal structures are stabilized by both the intramolecular N–H···O and intermolecular N–H···N hydrogen bonding.     

A hierarchical model for rate-dependent polycrystals

A hierarchical model of a polycrystalline aggregate of rigid viscoplastic grains is formulated, and a robust and efficient computational algorithm for its solution is proposed. The polycrystalline aggregate is modeled as a binary tree. The leaves of the binary tree represent grains, and higher tree nodes represent increasingly larger sub-aggregates of grains. The root of the tree represents the entire polycrystalline aggregate. Velocity and traction continuity are enforced across the interface between the children of each non-leaf node in the binary tree. The hierarchical model explicitly models intergranular interactions but is nevertheless comparable in computational effort to the mean field models of polycrystal plasticity. Simulations of tensile, compressive, torsional, and plane strain deformation of copper lead to predictions in good agreement with experiments, and highlight the interconnection between grain deformations and intergranular constraints. It is inferred from the results that a hybrid mean field/hierarchical model represents a computationally efficient methodology to simulate polycrystal deformation while accounting for intergranular interactions.     

An Experimental Design Approach to Quantitative Expression for Quality Control of a Multicomponent Antidiabetic Formulation by the HILIC Method

A rapid and reproducible hydrophilic liquid chromatography (HILIC) process was established for concomitant determination of remogliflozin etabonate (RE), vildagliptin (VD), and metformin (MF) in a formulation. A face-centered central composite experimental design was employed to optimize and predict the chromatographic condition by statistically studying the surface response model and design space with desirability close to one. A HILIC column with a simple mobile phase of acetonitrile (65% v/v) and 20 mM phosphate buffer (35% v/v, pH 6, controlled with orthophosphoric acid) was used to separate RE, VD, and MF. RE, VD, and MF were separated in 3.6 min using an isocratic mode mobile phase flow at a flow rate of 1.4 mL at room temperature, and the analytes were examined by recording the absorption at 210 nm. The developed HILIC method was thoroughly validated for all parameters recommended by ICH, and linearity was observed in the ranges 20–150 µg/mL, 10–75 µg/mL, and 50–750 µg/mL for RE, VD, and MF, respectively, along with excellent regression coefficients (r² > 0.999). The calculated percentage relative deviation and relative error ascertained the precision and accuracy of the method. The selectivity and accuracy were further confirmed by the high percentage recovery of added standard drugs to the formulation using the standard addition technique. The robustness of the HILIC processes was confirmed by developing a half-normal probability plot and Pareto chart, as the slight variation of a single factor had no significant influence on the assay outcomes. Utilization of the optimized HILIC procedure for concurrent quantification of RE, VD, and MF in solid dosage forms showed accurate and reproducible results. Hence, the fast HILIC method can be regularly employed for the quality assurance of pharmaceutical preparations comprising RE, VD, and MF.     

AMPK suppresses Th2 cell responses by repressing mTORC2

Allergic inflammation is a T helper 2 (Th2) cell-driven pathophysiological phenomenon, but the mechanism by which the metabolic cascade affects Th2 cell differentiation remains unclear. In this study, we investigated the roles of AMP-activated protein kinase (AMPK) and intracellular energy sensors in Th2 cell differentiation and the pathogenesis of allergic inflammation. Accordingly, T-cell-specific AMPK or Sirtuin 1 (Sirt1)-knockout mice were subjected to allergic inflammation, and their Th2 cell responses were investigated. The results demonstrated that inducing allergic inflammation in AMPK- and Sirt1-knockout mice increased Th2 cell responses and exacerbated allergic phenotypes. Furthermore, treatment with 5-aminoimidazole-4-carboxamide ribonucleotide (AICAR), an activator of AMPK, ameliorated allergic inflammation in mice. Mechanistically, our findings revealed that AMPK repressed mechanistic target of rapamycin complex 2 (mTORC2), which downregulated the expression of suppressor of cytokine signaling 5 (SOCS5) in CD4⁺ T cells. In addition, the loss of AMPK signaling reduced SOCS5 expression and increased interleukin-4-STAT6–GATA3 axis-mediated Th2 cell differentiation. Finally, the T-cell-specific deletion of Rictor, a member of mTORC2, in Sirt1^T-KO mice led to the reversal of allergic exacerbation to the level in control mice. Overall, our findings suggest that AMPK in CD4⁺ T cells inhibits the differentiation of Th2 cells by repressing mTORC2 and thus serves as a potential target for Th2 cell-associated diseases.Subject terms: Lymphocytes, Inflammation     

Multi-objectives for incremental cell formation problem

Over the past three decades considerable amount of research work has been reported in the literature of Group Technology (GT). Most of the research work is concerned with formation of machine cells and part families. This is because cell formation is considered to be the most complex and the most important aspect of Cellular Manufacturing System (CMS). Due to NP completeness of cell formation problem, many heuristics have been developed. These heuristics are developed for both single as well as multiple objectives for the comprehensive cell formation. Here all part types and machine types are considered at a time for cell conversion and that all cells are designed at a single point in time. But planning and implementation of most cell conversions in industry are incremental ones, and not comprehensive. This issue has not been addressed in GT literature adequately. In this paper we consider multiple objectives for incremental cell formation and develop, a lexicographic based simulated annealing algorithm. The performance of the algorithm is tested over several data sets by taking different initial feasible solutions generated using different heuristics.