Intermolecular interactions with the direct reaction field method

The direct reaction field (DRF ) method, developed to incorporate the effects of a (large) semiclassical environment into the Hamiltonian of a quantum mechanical system, is briefly reviewed. It is shown that the DRF method behaves—at least—like a supermolecule SCF calculation. With the water dimer as an example, the similarity with the SCF procedure is demonstrated, and an application to the interaction between the active site of papain and the remaining 3000 or so atoms of this protein shows the inadequacy of dielectric constant models and the necessity of including atomic polarizabilities in model force fields.     

Accumulation and distribution of elements in rice /seed,brand layer,husk/ by neutron activation analysis

Various rice samples /seed, brand layer, husk/ from Vietnam were analyzed for Se, Hg, Cr, Ni, Sc, Rb, Fe, Zn and Co by neutron activation analysis. The concentration values found /seed/ were the following: Se 0.04–0.07 ppm, Hg 0.02–0.07 ppm, Cr 2.13–8.65 ppm, Ni 1.56–4.95 ppm, Sc 0.02–0.06 ppm, Rb 0.84–2.71 ppm, Fe 26.31–96.07 ppm, Zn 10.65–27.39 ppm and Co 0.02–0.15 ppm. The values were reported in ppm /dry weight/. Statistical analysis /t-test, t=0.05/ showed that the content of elements varies between sorts of rice; the content of Rb, Fe, Ni, Cr of rice husk was significantly higher than in rice seed and brand layer.     

Determination of dissolved manganese in natural waters by differential pulse cathodic stripping voltammetry

A procedure based on differential pulse cathodic stripping voltammetry on the graphite electrode is described for the determination of dissolved manganese in natural waters buffered at pH about 6.5 with acetate solution. In order to avoid interference of iron(II) the addition of fluoride is used. The limit of detection is 3 g/l for a deposition time of 6 min. Acidification and UV-irradiation are recommended for samples containing dissolved organic matter. Results of manganese determination in table mineral waters are reported and the possibility of manganese speciation is discussed.     

Comparison of a pump-around, a diffusion-driven, and a shear-driven system for the hybridization of mouse lung and testis total RNA on microarrays

In the present study, we demonstrate the benefits of a shear-driven rotating microchamber system for the enhancement of microarray hybridizations, by comparing the system with two commonly used hybridization techniques: purely diffusion-driven hybridization under coverslip and hybridization using a fully automated hybridization station, in which the sample is pumped in an oscillating manner. Starting from the same amount of DNA for the three different methods, a series of hybridization experiments using mouse lung and testis DNA is presented to demonstrate these benefits. The gain observed using the rotating microchamber is large: both in terms of analysis speed (up to tenfold increase) and in final spot intensity (up to sixfold increase). The gain is due to the combined effect of the hybridization chamber miniaturization (leading to a sample concentration increase if comparing iso-mass conditions) and the transport enhancement originating from the rotational shear-driven flow induced by the rotation of the chamber bottom wall.     

Natural anti-HIV agents. Part 3: Litseaverticillols A-H, novel sesquiterpenes from Litsea verticillata

Bioassay directed-fractionation led to the identification of litseaverticillols A-H (1-8) from the leaves and twigs of Litsea verticillata Hance. These new sesquiterpenes possess a unique skeleton that was recently designated as ‘litseane’. The structures of these compounds were determined by spectroscopic means including 1D and 2D NMR data. Structural configurations were determined by ROESY experiments. Mosher ester reactions and optical rotation measurements established the sesquiterpenes 1-8 as racemates. Isolates 1-8 inhibited HIV-1 replication in HOG.R5 cells with IC₅₀ values ranging from 2 to 15 μg/ml (8-58 μM) while affecting the growth of HOG.R5 at concentrations 2-3-fold higher. Based on this data, structure-activity relationships can be discerned, suggesting compounds of this class are good candidates for analog production.     

Naphthalene Complexation by β-Cyclodextrin: Influence of Added Short Chain Branched and Linear Alcohols

Naphthalene forms 1 : 1 complexes with -cyclodextrin (-CD)in water. The binding constant is 377 ± 35 M^-1. Addition of linear or branched alcohols causes a reduction in the apparent strength of naphthalene binding (K_app) compared to the value in the absence of additives. For example, 1% 1-pentanol reduces K_app to 184 ± 31 M^-1. Branching does not alter K_app much for a given number of carbon atoms, e.g., it is 113 ± 9 M^-1for 2-pentanol and 116 ± 8 M^-1for 3-pentanol. The exception to this is tert-butanol for which K_app is 577 ± 40 M^-1. The variation in K_app as a function of [1-pentanol] yields values for the individual equilibrium constants contributing to K_app. This reveals that a ternary complex forms involving naphthalene, the CD and 1-pentanol. The constant for formation of the ternary complex is 99 ± 29 M^-2. NaI quenching of naphthalene fluorescence indicates that the CD cavity partially protects the naphthalene excited state fromthis water phase quencher. Interestingly, the Stern–Volmer constant is lower in the presence of 1-pentanol than in its absence, although there should be more unbound (and therefore more NaI accessible) naphthalene in the former system than in the latter. These apparently contradictory results are discussed in terms of ternary complex formation.     

Substituent control of hydrogen bonding in palladium(II)-pyrazole complexes

Inter- and intramolecular hydrogen bonding of an N-H group in pyrazole complexes was studied using ligands with two different groups at pyrazole C-3 and C-5. At C-5, groups such as methyl, i-propyl, phenyl, or tert-butyl were present. At C-3, side chains L-CH(2)- and L-CH(2)CH(2)- (L = thioether or phosphine) ensured formation of chelates to a cis-dichloropalladium(II) fragment through side-chain atom L and the pyrazole nitrogen closest to the side chain. The significance of the ligands is that by placing a ligating side chain on a ring carbon (C-3), rather than on a ring nitrogen, the ring nitrogen not bound to the metal and its attached proton are available for hydrogen bonding. As desired, seven chelate complexes examined by X-ray diffraction all showed intramolecular hydrogen bonding between the pyrazole N-H and a chloride ligand in the cis position. In addition, however, intermolecular hydrogen bonding could be controlled by the substituent at C-5: complexes with either a methyl at C-5 or no substituent there showed significant intermolecular hydrogen bonding interactions, which were completely avoided by placing a tert-butyl group at C-5. The acidity of two complexes in acetonitrile solutions was estimated to be closer to that of pyridinium ion than those of imidazolium or triethylammonium ions.     

Formal orthogonal polynomials and Hankel/Toeplitz duality

For classical polynomials orthogonal with respect to a positive measure supported on the real line, the moment matrix is Hankel and positive definite. The polynomials satisfy a three term recurrence relation. When the measure is supported on the complex unit circle, the moment matrix is positive definite and Toeplitz. Then they satisfy a coupled Szeg recurrence relation but also a three term recurrence relation. In this paper we study the generalization for formal polynomials orthogonal with respect to an arbitrary moment matrix and consider arbitrary Hankel and Toeplitz matrices as special cases. The relation with Padé approximation and with Krylov subspace iterative methods is also outlined.This research was supported by the National Fund for Scientific Research (NFWO), project Lanczos, grant #2.0042.93.