Pluronic additives: a solution to sticky problems in digital microfluidics

Digital microfluidics (DMF) is a promising technique for carrying out miniaturized, automated biochemical assays in which discrete droplets of reagents are actuated on the surface of an array of electrodes. A limitation for DMF is nonspecific protein adsorption to device surfaces, which interferes with assay fidelity and can cause droplets to become unmovable. Here, we report the results of a quantitative analysis of protein adsorption on DMF devices by means of confocal microscopy and secondary ion mass spectrometry. This study led us to a simple and effective method for limiting the extent of protein adsorption: the use of low concentrations of Pluronic F127 as a solution additive. This strategy has a transformative effect on digital microfluidics, facilitating the actuation of droplets containing greater than 1000-fold higher protein concentrations than is possible without the additive. To illustrate the benefits of this new method, we implemented a DMF-driven protein digest assay using large concentrations (1 mg/mL) of protein-substrate. The use of Pluronic additives solves a sticky problem in DMF, which greatly expands the range of applications that are compatible with this promising technology.     

Phosphoesterase activity of polyoxomolybdates: diffusion ordered NMR spectroscopy as a tool for obtaining insights into the reactivity of polyoxometalate clusters

Diffusion ordered NMR spectroscopy (DOSY NMR) is shown to be an excellent tool for observing reactive transients in the hydrolysis of the phosphatase model substrate (p-nitrophenyl)phosphate (NPP) promoted by polyoxomolybdate.     

Guanine bases in DNA G-quadruplex adopt nonplanar geometries owing to solvation and base pairing

The effect of base pairing and solvation on pyramidalization of the glycosidic nitrogen found in the residues of parallel G-quadruplex with NDB ID UDF062 is analyzed and explained with theoretical calculations. The extent of the pyramidalization depends on the local geometry of the 2'-deoxyguanosine residues, namely on their glycosidic torsion and sugar pucker, which are predetermined by the 3D-architecture of G-quadruplex. Pyramidal inversion of the glycosidic nitrogen found in 2'-deoxyguanosines of G-quadruplex is induced owing to site-specifically coordinated solvent. Different adiabatic structural constraints used for fixing the base-to-sugar orientation of 2'-deoxyguanosine in geometry optimizations result in different extents of pyramidalization and induce pyramidal inversion of the glycosidic nitrogen. These model geometry constraints helped us analyze the effect of real constraints represented by explicit molecular environment of selected residues of the G-quadruplex. The maximal extent of the glycosidic nitrogen pyramidalization found in the high-resolution crystal structure corresponds to the calculation to deformation energy of only 1 kcal mol(-1). The out-of-plane deformations of nucleobases thus provide a way for compensating the site-specific external environmental stress on the G-quadruplex.     

Ultrafast infrared and UV-vis studies of the photochemistry of methoxycarbonylphenyl azides in solution

The photochemistry of 4-methoxycarbonylphenyl azide (2a), 2-methoxycarbonylphenyl azide (3a), and 2-methoxy-6-methoxycarbonylphenyl azide (4a) were studied by ultrafast time-resolved infrared (IR) and UV-vis spectroscopies in solution. Singlet nitrenes and ketenimines were observed and characterized for all three azides. Isoxazole species 3g and 4g are generated after photolysis of 3a and 4a, respectively, in acetonitrile. Triplet nitrene 4e formation correlated with the decay of singlet nitrene 4b. The presence of water does not change the chemistry or kinetics of singlet nitrenes 2b and 3b, but leads to protonation of 4b to produce nitrenium ion 4f. Singlet nitrenes 2b and 3b have lifetimes of 2 ns and 400 ps, respectively, in solution at ambient temperature. The singlet nitrene 4b in acetonitrile has a lifetime of about 800 ps, and reacts with water with a rate constant of 1.9 × 10(8) L·mol(-1)·s(-1) at room temperature. These results indicate that a methoxycarbonyl group at either the para or ortho positions has little influence on the ISC rate, but that the presence of a 2-methoxy group dramatically accelerates the ISC rate relative to the unsubstituted phenylnitrene. An ortho-methoxy group highly stabilizes the corresponding nitrenium ion and favors its formation in aqueous solvents. This substituent has little influence on the ring-expansion rate. These results are consistent with theoretical calculations for the various intermediates and their transition states. Cyclization from the nitrene to the azirine intermediate is favored to proceed toward the electron-deficient ester group; however, the higher energy barrier is the ring-opening process, that is, azirine to ketenimine formation, rendering the formation of the ester-ketenimine (4d') to be less favorable than the isomeric MeO-ketenimine (4d).     

Inclusion compound based approach to arrays of artificial dipolar molecular rotors. A surface inclusion

We describe an approach to regular triangular arrays of dipolar molecular rotors based on insertion of dipolar rotator carrying shafts as guests into channels of a host, tris(o-phenylenedioxy)cyclotriphosphazene (TPP). The rotor guests can either enter the bulk of the host or stay at or near the surface, if a suitable stopper is installed at the end of the shaft. Differential scanning calorimetry, solid-state NMR, and powder X-ray diffraction were used to examine the insertion of a dipolar rotor synthesized for the purpose, 1-n-hexadecyl-12-(2,3-dichlorophenyl)-p-dicarba-closo-dodecaborane, and it was found that it forms a surface inclusion compound. Rotational barriers from 1.2 to 9 kcal/mol were found by dielectric spectroscopy and were attributed to rotors inserted into the surface to different degrees, some rubbing the surface as they turn.     

A New Lower Bound Based on Gromov’s Method of Selecting Heavily Covered Points

Boros and Füredi (for d=2) and Bárány (for arbitrary d) proved that there exists a positive real number c _d such that for every set P of n points in R ^d in general position, there exists a point of R ^d contained in at least $c_{d}\binom{n}{d+1}$ d-simplices with vertices at the points of P. Gromov improved the known lower bound on c _d by topological means. Using methods from extremal combinatorics, we improve one of the quantities appearing in Gromov??s approach and thereby provide a new stronger lower bound on c _d for arbitrary d. In particular, we improve the lower bound on c ₃ from 0.06332 to more than 0.07480; the best upper bound known on c ₃ being 0.09375.     

Bis[(benzo-18-crown-6)-4,5-ylmethyl]-1,3,4,6-diphenylglycoluril: The first representative of a new class of bis(crown ethers) and the synthesis and crystal structure of its complex with sodium picrate

A statistical Monte Carlo computer simulation has shown that the use of a diphenylglycoluril fragment as a rigid linker should give bis(crown ethers) with identically oriented benzocrown rings located closely in space. The syntheses of the first representative of this series, bis[(benzo-18-crown-6)-4,5-ylmethyl]-1,3,4,6-diphenylglycoluril and its complex with sodium picrate have been described. The crystal structure of the complex has been determined by X-ray diffraction: space group $P\bar 1$ , a = 13.976(3) Å, b = 16.723(3) Å, c = 20.578(4) Å, α = 98.74(2)°, β = 106.19(3)°, γ = 114.07(3)°. The complex represents a new type of coordination polymer formed by a combination of coordination and hydrogen bonds and stacking, which are favored by the U-shaped conformation of diphenylglycoluril.     

The quadrupole moment of the Sb nucleus from molecular microwave data and calculated relativistic electric-field gradients

The recently determined accurate values of the nuclear quadrupole coupling constant of the Sb nucleus in SbN, SbP, SbF, and SbCl and the calculated electric-field gradients at Sb in these molecules are used to obtain the nuclear quadrupole moment of 121Sb and 123Sb. The calculation of the electric-field gradient has been carried out by using the infinite-order two-component relativistic method in the scalar approximation. The accompanying change of picture of the electric-field gradient operator has been accounted for by employing the shifted nucleus model of nuclear quadrupoles. The electron correlation effects are calculated at the level of the coupled cluster approximation. The present calculations give the "molecular" value of the nuclear quadrupole moment of 121Sb equal to -556+/-24 mb which is considerably different from the old "recommended" value of -360+/-40 mb and also differs from the recent "solid-state" result (-669+/-15 mb). The validation of the present data is comprehensively discussed.     

Electrodeposition of composite materials PbO<Subscript>2</Subscript>-Ti and their physicochemical properties

In the work, the regularities of electrodeposition of composite materials based on PbO₂ containing the valve metal particles are considered. The content of dispersed phase in the composite depends on the electrolyte composition and conditions of deposition. The incorporation of titanium particles into PbO₂ considerably changes the deposit morphology. It is found that the service life of electrodes containing dispersed Ti phase increases by 4 times as compared with the conventional anodes made of pure PbO₂.