The Debye-Waller factor: From villain to hero in protein crystallography

A personal and partially anecdotal account is given of the role of the Debye–Waller factor in protein crystallography and protein dynamics.     

Angle-resolved photoemission study of a vacancy-induced state in substoichiometric VC

A vacancy induced state has been identified at about 1.8eV binding energy on the (100) face of VC_0.80 using angle-resolved photoelectron spectroscopy. The recorded spectra are compared with calculated spectra for VC_1.0 and the results show that the origin of the observed state cannot be accounted for by the energy band structure of VC_1.0. Photoemission spectra recorded after exposing the clean surface to O₂ and CO are also presented and used in a discussion of the sensitivity of the vacancy induced state to surface contamination.     

Steviosid aus Süßkraut

The diterpene glycoside stevioside is the most abundant among a group of sweet steviol glycosides, present in sweetleaf (Stevia rebaudiana), which is naturally occurring in Paraguay. It has already been used by the Guarani Indians as a sweetener. Since 2011 such “steviosides” have an EU approval as sweeteners E 960. They taste ca. 250 times sweeter than sucrose. Meanwhile, they have got a significant recognition, not least due to their use in Coca Cola life®. We describe the isolation of stevioside and rebaudioside A from dried leaves of the sweetleaf plant. The complete set of spectra for stevioside is reported. Based on students' laboratory work this project is a follow up of the book “Classics in Spectroscopy” by S. Berger und D. Sicker (Wiley‐VCH 2009).     

Cationic,Methylene‐Bridged,Intramolecular Donor‐Acceptor Systems Based on Zirconium and Hafnium and Phosphino‐methanides

A new access to cationic zirconium and hafnium compounds [L₂MCH₂PR₂][MeB(C₆F₅)₃] (L = Cp, Ind; R = iso‐Pr, tert‐Bu; M = Zr, Hf) exhibiting an intramolecular donor‐acceptor system was established by treating the precursors L₂M(Me)CH₂PR₂ with B(C₆F₅)₃ (BCF). Precursors 1 – 6 [L₂M(Me)CH₂PR₂ with L = Cp, Ind; R = iso‐Pr, tert‐Bu; M = Zr, Hf] were fully characterized. The crystal structures of these compounds revealed large M–CH₂–P bond angles with values of about 134° indicating the absence of interactions between the Lewis‐acid and Lewis‐base. The cationic compounds [L₂MCH₂PR₂][MeB(C₆F₅)₃] ( 7 – 12 ) were obtained by treatment of 1 – 6 with BCF. They were characterized by NMR spectroscopy, mass spectrometry, and elemental analyses; in H/D‐scrambling experiments with H₂/D₂ mixtures 7 – 12 disclosed their reactivity towards cleavage of hydrogen.     

A generalized force measure of conditions at crack tips

A tentative measure of the forces tending to cause crack growth—the apparent crack extension force—is defined within the framework of continuum mechanics. By an associated fracture criterion initiation of growth may be predicted as well as the direction of preferred growth. The theory is specialized to elastic, viscoelastic and elastic-plastic materials. Under specified conditions the apparent crack extension force may be expressed by surface integrals over the boundary of an arbitrary part of the body for quasi-static deformation and for steady-state propagation of the crack. For plane deformation and for infinitesimal deformation under plane stress conditions these surface integrals reduce to path independent line integrals which include the J integral by Rice[1] and the G integral by Sih[2] as special cases.     

The effect of hydration on the photo-deactivation pathways of 4-aminopyrimidine

The influence of water on the photo-deactivation process of 4-aminopyrimidine has been investigated by means of microsolvation and continuum solvation models. Two- and four-water models were used for the former purpose. Vertical excitations, stationary points on the first excited singlet surface, conical intersections (minima on the crossing seam) and reaction paths have been investigated at the state-averaged complete active space self-consistent field (CASSCF) and multistate CAS perturbation theory to second order (MS-CASPT2) levels of theory. A destabilizing effect of 0.2–0.3 eV has been observed for nπ∗ states while the ππ∗ state is almost unaffected. The two-water model gives already a good representation of hydration effects, especially when combined with the continuum model. A small enhancement of energy barriers (∼0.1 eV) is observed leading to the conclusion that the photodynamics of 4-aminopyrimidine should be affected only little by these solvent effects.     

NMR spectral assignment of 2α- and 3β-methylhopanes and evidence for boat conformation in D ring of 17α(H),21α(H)-hopanes

The full (1)H and (13)C NMR chemical shift assignment of 2α-methyl-17α(H),21β(H)-hopane is presented. This compound is formed in mature sediments from biogenic sources of 2β-methyl-17β(H),21β(H)-hopanoids, which include several cyanobacteria. In addition, full (1)H and (13)C NMR chemical shift data of all four 17,21 isomers of 3β-methylhopane have been assigned. The thermodynamically most stable 3β-configuration corresponds to that found in bacterial sources. The data presented here suggest minor corrections to the (13)C chemical assignments reported earlier for 17α(H)-hopanes. Moreover, spectral evidence indicates an unexpected ring-D boat conformation of 17α(H),21α(H)-hopanes, which may serve to explain the steric strain reported for this isomer.     

Systematic Investigation of Photoinduced Electron Transfer Controlled by Internal Charge Transfer and Its Consequences for Selective PdCl2 Coordination

Fluoroionophores of fluorophore–spacer–receptor format were prepared for detection of PdCl₂ by fluorescence enhancement. The fluorescent probes 1 – 13 consist of a fluorophore group, an alkyl spacer and a dithiomaleonitrile PdCl₂ receptor. First, varying the length of the alkylene spacer (compounds 1 – 3 ) revealed a dominant through‐space pathway for oxidative photoinduced electron transfer (PET) in CH₂‐bridged dithiomaleonitrile fluoroionophores. Second, fluorescent probes 4 – 9 containing two anthracene or pyrene fragments connected through CH₂ bridges to the dithiomaleonitrile unit were synthesized. Modulation of the oxidation potential (E_Ox) through electron‐withdrawing or ‐donating groups on the anthracene moiety regulates the thermodynamic driving force for oxidative PET (ΔG_PET) in bis(anthrylmethylthio)maleonitriles and therefore the fluorescence quantum yields (Φ_f), too. The new concept was confirmed and transferred to pyrenyl ligands, and fluorescence enhancements (FE) greater than 3.2 in the presence of PdCl₂ were achieved by 7 and 8 (FE=5.4 and 5.2). Finally, for comparison, monofluorophore ligands 10 – 13 were synthesized.