Hierarchical self-assembly of designed 2 x 2-alpha-helix bundle proteins on Au(111) surfaces

Self-assembled monolayers of biomolecules on atomically planar surfaces offer the prospect of complex combinations of controlled properties, e.g., for bioelectronics. We have prepared a novel hemi-4-alpha-helix bundle protein by attaching two alpha-helical peptides to a cyclo-dithiothreitol (cyclo-DTT) template. The protein was de novo designed to self-assemble in solution to form a 4-alpha-helix bundle, whereas the disulfide moiety enables the formation of a self-assembled monolayer on a Au(111) surface by opening of the disulfide, thus giving rise to a two-step self-assembly process. The 2 x 2-alpha-helix bundle protein and its template were studied by X-ray photo electron spectroscopy (XPS), electrochemical methods, and electrochemical in situ scanning tunneling microscopy (in situ STM). XPS showed that the cyclo-DTT opens on adsorption to a gold surface with the integrity of the 2 x 2-alpha-helix bundle proteins retained. The surface properties of the DTT and 2 x 2-alpha-helix bundle protein adlayer were characterized by interfacial capacitance and impedance techniques. Reductive desorption was used to determine the coverage of the adlayers, giving values of 65 and 16 muC cm(-2) for DTT and 2 x 2-helix, respectively. The 2 x 2-alpha-helix bundle protein adlayers were imaged by in situ STM. The images indicated a dense monolayer according with the voltammetric data. No long-range order could be detected, but two clearly distinct STM contrasts were assigned to 2 x 2-alpha-helix bundle protein molecules oriented in parallel and antiparallel conformations. The template molecule DTT alone forms highly ordered 30-40 nm domains, giving an adlayer density which agreed well with the coverage determined by voltammetry. This could be exploited in STM imaging of mixed DTT/2 x 2-alpha-helix bundle protein monolayers, with clearly distinct STM patterns of the two components.     

Divisibility of the stable Miller-Morita-Mumford classes

We determine the sublattice generated by the Miller-Morita- Mumford classes in the torsion free quotient of the integral cohomology ring of the stable mapping class group. We further decide when the mod reductions vanish.

     

On the Possibilities and Considerations of Interfacing Ultra-High Vacuum Equipment with an Electrochemical Setup

Efficient electrocatalysts are required in order for electrocatalysis to play a large role in a future largely based on renewable energy sources. To rationally design these catalysts we need to understand the fundamental origin of their activities. In order to elucidate the relationship between catalyst structure and electrochemical behaviour, we investigate well-defined single-crystal catalysts in a UHV chamber interfaced with an electrochemical setup. Using the capabilities of UHV based methods, we can prepare more complex surface structures than it is possible with traditional EC methods and investigate their electrochemical behaviour. We exemplify this by showing results from both clean and intentionally structured Pt(111), Cu(111) and Pt/Cu(111).     

Analysis of the methods proposed for computing the scattering of atoms from a hard corrugated surface model of He/LiF (001)

It appears that the scattering of atoms on crystal surfaces is accounted for by a corrugated infinite wall model of the surface. To determine the “corrugation function” which represents best the experimental scattering intensities, it is necessary to choose among many possible versions, the simplest and most effective computational method of the theoretical scattering amplitudes. It is the purpose of this paper to analyze the relative merits of three particular versions which we call HDM, NHM and GR, and which are described in section 3. This comparison is carried out on the He/LiF(001) system for variable incident wave vector (k) and orientation (θ_i) as well as a number of Fourier components (ζ_G) used to describe the “corrugation function”. We conclude that the GR method presents advantages over the other two: (i) it reduces the computer time necessary for the HDM and NHM methods, (ii) converges and computes to within 10^?4 in unitarity the scattering amplitudes in a larger range of energies as well as angular and corrugation parameters, and (iii) it presents a great simplicity and the corrugation is very handy. The size of that range depends on the computer facilities used. In our case, the GR method works for any calculation in which kC₀ < 9 and $\text{C}{}_0\text{< 0.35}\text{A}\text{?}$ (where k is the incident wave vector and C₀ twice the amplitude of the corrugation). These characteristics prove to make the GR method a good tool for the study of surface crystallography by parametrization of the surface corrugation.     

Surface charge density,membrane potential and salt flux

The surface charge density of a passive membrane may be determined from the Gouy-Chapman double layer potentials at the membrane surfaces. Here, we show the formal aspect of a method which allows determination of the surface charge density from measurements of the membrane potential, diffusion potential and salt flux through the considered membranes.     

On the Swan subgroup of certain periodic groups

Ohne Zusammenfassung     

Determination of wheat quality by mass spectrometry and multivariate data analysis

Multivariate analysis has been applied as support to proteome analysis in order to implement an easier and faster way of data handling based on separation by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. The characterisation phase in proteome analysis by means of simple visual inspection is a demanding process and also insecure because subjectivity is the controlling element. Multivariate analysis offers, to a considerable extent, objectivity and must therefore be regarded as a neutral way to evaluate results obtained by proteome analysis.Proteome analysis of storage proteins from the wheat gluten complex based on two-dimensional electrophoresis and analysis of the N-terminal sequence has revealed a protein homologous to gamma-gliadins, tentatively associated with quality and within the molecular weight range 27-35 kDa. Further examinations of gliadin data based on mass spectrometry revealed that quality among wheat varieties could be determined by means of principal component analysis. Further examinations by interval partial least squares made it possible to encircle an overall optimal molecular weight interval from 31.5 to 33.7 kDa. The use of multivariate analysis on data from mass spectrometry has thus shown to be a promising technique to minimize the number of two-dimensional gels within the field of proteome analysis.     

Identification of substances migrating from plastic baby bottles using a combination of low‐resolution and high‐resolution mass spectrometric analysers coupled to gas and liquid chromatography

This work presents a strategy for elucidation of unknown migrants from plastic food contact materials (baby bottles) using a combination of analytical techniques in an untargeted approach. First, gas chromatography (GC) coupled to mass spectrometry (MS) in electron ionisation mode was used to identify migrants through spectral library matching. When no acceptable match was obtained, a second analysis by GC‐(electron ionisation) high resolution mass spectrometry time of flight (TOF) was applied to obtain accurate mass fragmentation spectra and isotopic patterns. Databases were then searched to find a possible elemental composition for the unknown compounds. Finally, a GC hybrid quadrupole‐TOF‐MS with an atmospheric pressure chemical ionisation source was used to obtain the molecular ion or the protonated molecule. Accurate mass data also provided additional information on the fragmentation behaviour as two acquisition functions with different collision energies were available (MS^E approach). In the low‐energy function, limited fragmentation took place, whereas for the high‐energy function, fragmentation was enhanced. For less volatile unknowns, ultra‐high pressure liquid chromatography‐quadrupole‐TOF‐MS was additionally applied. Using a home‐made database containing common migrating compounds and plastic additives, tentative identification was made for several positive findings based on accurate mass of the (de)protonated molecule, product ion fragments and characteristic isotopic ions. Six illustrative examples are shown to demonstrate the modus operandi and the difficulties encountered during identification. The combination of these techniques was proven to be a powerful tool for the elucidation of unknown migrating compounds from plastic baby bottles. Copyright © 2015 John Wiley & Sons, Ltd.     

From fundamental studies of reactivity on single crystals to the design of catalysts

One of the prominent arguments for performing surface science studies have for many years been to improve and design new and better catalysts. Although surface science has provided the fundamental framework and tools for understanding heterogeneous catalysis until now there have been extremely few examples of actually designing new catalysts based solely on surface science studies. In this review, we shall demonstrate how a close collaboration between different fundamental disciplines like structural-, theoretical-and reactivity-studies of surfaces as well as a strong interaction with industry can have strong synergetic effects and how this was used to develop a new catalyst. As so often before the studies reviewed here were not initiated with the objective to solve a specific problem, but realizing that a new class of very stable two-dimensional alloys could be synthesized from otherwise immiscible metals made it possible to present a new solution to a specific problem in the industrial catalysis relating to methane activation in the steam reforming process. Methane is the main constituent of natural gas and it is an extremely important raw material for many large scale chemical processes such as production of hydrogen, ammonia, and methanol. In the steam reforming process methane and water are converted into a mixture of mainly hydrogen and carbon monoxide, the so-called synthesis gas. Industrially the steam reforming process usually takes place over a catalyst containing small nickel crystallites highly dispersed on a porous support material like aluminum/magnesium oxides in order to achieve a high active metal area. There is a general consensus that the rate limiting step of this process is the dissociative sticking of methane on the nickel surface. Driven by the desire to understand this step and hopefully be able to manipulate the reactivity, a large number of investigations of the methane/nickel interaction have been performed using nickel single crystals as model catalysts. The process has been investigated, both under thermal conditions and by using supersonic molecular beams elucidating the dynamical aspects of the interaction. The results obtained will be reviewed both with respect to the clean and modified nickel surfaces. Especially the two-dimensional gold–nickel alloy system will be considered since the fundamental results here have lead to the invention of a new nickel based catalyst, which is much more resistant to carbon formation than the conventional nickel catalysts. This may be one of the first examples of how fundamental research can lead to the invention of new catalysts. Other overlayer/alloy combinations, their stability, and reactivity are briefly discussed with respect to manipulation of the surface reactivity towards methane.