Pre-clinical whole-body fluorescence imaging: Review of instruments,methods and applications

Fluorescence sampling of cellular function is widely used in all aspects of biology, allowing the visualization of cellular and sub-cellular biological processes with spatial resolutions in the range from nanometers up to centimeters. Imaging of fluorescence in vivo has become the most commonly used radiological tool in all pre-clinical work. In the last decade, full-body pre-clinical imaging systems have emerged with a wide range of utilities and niche application areas. The range of fluorescent probes that can be excited in the visible to near-infrared part of the electromagnetic spectrum continues to expand, with the most value for in vivo use being beyond the 630 nm wavelength, because the absorption of light sharply decreases. Whole-body in vivo fluorescence imaging has not yet reached a state of maturity that allows its routine use in the scope of large-scale pre-clinical studies. This is in part due to an incomplete understanding of what the actual fundamental capabilities and limitations of this imaging modality are. However, progress is continuously being made in research laboratories pushing the limits of the approach to consistently improve its performance in terms of spatial resolution, sensitivity and quantification. This paper reviews this imaging technology with a particular emphasis on its potential uses and limitations, the required instrumentation, and the possible imaging geometries and applications. A detailed account of the main commercially available systems is provided as well as some perspective relating to the future of the technology development. Although the vast majority of applications of in vivo small animal imaging are based on epi-illumination planar imaging, the future success of the method relies heavily on the design of novel imaging systems based on state-of-the-art optical technology used in conjunction with high spatial resolution structural modalities such as MRI, CT or ultrasound.     

Multiple-gate time domain diffuse fluorescence tomography allows more sparse tissue sampling without compromising image quality

Diffuse fluorescence tomography systems that employ highly sensitive photo-multiplier tubes for single-photon detection are pushing the sensitivity limits of the field. However, each of these detectors only offers a single data projection to be collected, implying these imaging systems either require many detectors or long scan times to collect full data sets for image reconstruction. This study presents a method of utilizing the time-resolved collection capabilities of time-correlated single-photon counting techniques to increase spatial resolution and to reduce the number of data projections to produce reliable fluorescence reconstructions. Experimental tissue phantom results demonstrate that using data at 10 time gates in the fluorescence reconstructions for only 40 data projections provided superior image accuracy when compared to reconstructions on 320 continuous-wave data projections.     

The numerical integration of relative equilibrium solutions. The nonlinear Schrodinger equation

We analyse different error propagation mechanisms for conservativeand nonconservative time-integrators of nonlinear Schrödingerequations. We use a geometric approach based on interpretingwaves as relative equilibria.     

Toward whole-body optical imaging of rats using single-photon counting fluorescence tomography

We used single-photon counting (SPC) detection for diffuse fluorescence tomography to image nanomolar (nM) concentrations of reporter dyes through a rat. Detailed phantom data are presented to show that every centimeter increase in tissue thickness leads to 1 order of magnitude decrease in the minimum fluorophore concentration detectable for a given detector sensitivity. Specifically, here, detection of Alexa Fluor 647 dyes is shown to be achievable for concentrations as low as 1 nM (<200 fM) through more than 5 cm in tissue phantoms, which indicates that this is feasible in larger rodent models. Because it is possible to detect sub-nM fluorescent inclusions with SPC technology in rats, it follows that it is possible to localize subpicomolar fluorophore concentrations in mice, putting the concentration sensitivity limits on the same order as nuclear medicine methods.     

Best Approximation in Hardy Spaces and by Polynomials, with Norm Constraints

Two related approximation problems are formulated and solved in Hardy spaces of the disc and annulus. With practical applications in mind, truncated versions of these problems are analysed, where the solutions are chosen to lie in finite-dimensional spaces of polynomials or rational functions, and are expressed in terms of truncated Toeplitz operators. The results are illustrated by numerical examples. The work has applications in systems identification and in inverse problems for PDEs.     

From Bq cm−3 to Bq cm−2 (and conversely)—part 1: a useful conversion for autoradiography

Journal of Radioanalytical and Nuclear Chemistry - Autoradiography technique generally provides an image in cps cm?2, the conversion in Bq&nbsp;g?1 remaining a challenge. The Geant4...     

Linear and non-linear dielectric properties of a short-pitch ferroelectric liquid crystal stabilized by a polymer network

Linear and non-linear dielectric measurements were carried out on a ferroelectric liquid crystal stabilized by an anisotropic polymer network. The polymerization process was achieved at room temperature. It was performed from an achiral monomer in the ferroelectric chiral smectic C phase, exhibiting a very short helical pitch and a large polarization. The linear and non-linear dielectric spectroscopy were also completed by textural morphology as well as structural and ferroelectric characterizations. All these measurements were carried out on a pure ferroelectric liquid crystal material and on composite films containing two polymer concentrations. The increase of the polymer network density leads to a decrease of the dielectric strength determined in the linear and non-linear dielectric spectroscopy. The complementarity between the linear and non-linear dielectric measurements and their confrontation with a theoretical model allowed the simultaneous determination of some physical parameters such as macroscopic polarization, rotational viscosity and twist elastic energy. We also discuss the effect of the polymer network density on the obtained physical parameters.     

Circularly polarized few-optical-cycle solitons in Kerr media: A complex modified Korteweg-de Vries model

We consider the propagation of few-cycle pulses (FCPs) in cubic nonlinear media exhibiting a “crystal-like” structure, beyond the slowly varying envelope approximation, taking into account the wave polarization. By using the reductive perturbation method we derive from the Maxwell–Bloch–Heisenberg equations, in the long-wave-approximation regime, a non-integrable complex modified Korteweg-de Vries equation describing the propagation of circularly polarized (CP) FCPs. By direct numerical simulations of the governing nonlinear partial differential equation we get robust CP FCPs and we show that the unstable ones decays into linearly polarized half-cycle pulses, whose polarization direction slowly rotates around the propagation axis.     

A versatile approach to the study of the transient response of a submerged thin shell

The transient response of submerged two-dimensional thin shell subjected to weak acoustical or mechanical excitations is addressed in this paper. The proposed approach is first exposed in a detailed manner: it is based on Laplace transform in time, in vacuo eigenvector expansion with time-dependent coefficients for the structural dynamics and boundary-integral formulation for the fluid. The projection of the fluid pressure on the in vacuo eigenvectors leads to a fully coupled system involving the modal time-dependent displacement coefficients, which are the problem unknowns. They are simply determined by matrix inversion in the Laplace domain. Application of the method to the response of a two-dimensional immersed shell to a weak acoustical excitation is then exposed: the proposed test-case corresponds to the design of immersed structures subjected to underwater explosions, which is of paramount importance in naval shipbuilding. Comparison of a numerical calculation based on the proposed approach with an analytical solution is exposed; versatility of the method is also highlighted by referring to “classical” FEM/FEM or FEM/BEM simulations. As a conspicuous feature of the method, calculation of the fluid response functions corresponding to a given geometry has to be performed once, allowing various simulations for different material properties of the structure, as well as for various excitations on the structure. This versatile approach can therefore be efficiently and extensively used for design purposes.     

Dissipative solitons compounds in a fiber laser. Analogy with the states of the matter

We investigate experimentally ordered and disordered pattern formation of solitons in a double-clad fiber laser. We point out an analogy between the different states of matter and the states of a set of dissipative solitons. In particular, we have identified a gas, a supersonic gas flow, a liquid, a polycrystal and a crystal of solitons. The different states are obtained only by adjustment of the intracavity phase plates.