Active participation of membrane lipids in inhibition of multidrug transporter P-glycoprotein

P-glycoprotein (Pgp) is a major efflux pump in humans, overexpressed in a variety of cancers and associated with the development of multi-drug resistance. Allosteric modulation by various ligands (e.g., transport substrates, inhibitors, and ATP) has been biochemically shown to directly influence structural dynamics, and thereby, the function of Pgp. However, the molecular details of such effects, particularly with respect to the role and involvement of the surrounding lipids, are not well established. Here, we employ all-atom molecular dynamics (MD) simulations to study the conformational landscape of Pgp in the presence of a high-affinity, third-generation inhibitor, tariquidar, in comparison to the nucleotide-free (APO) and the ATP-bound states, in order to characterize the mechanical effects of the inhibitor that might be of relevance to its blocking mechanism of Pgp. Simulations in a multi-component lipid bilayer show a dynamic equilibrium between open(er) and more closed inward-facing (IF) conformations in the APO state, with binding of ATP shifting the equilibrium towards conformations more prone to ATP hydrolysis and subsequent events in the transport cycle. In the presence of the inhibitor bound to the drug-binding pocket within the transmembrane domain (TMD), Pgp samples more open IF conformations, and the nucleotide binding domains (NBDs) become highly dynamic. Interestingly, and reproduced in multiple independent simulations, the inhibitor is observed to facilitate recruitment of lipid molecules into the Pgp lumen through the two proposed drug-entry portals, where the lipid head groups from the cytoplasmic leaflet penetrate into and, in some cases, translocate inside the TMD, while the lipid tails remain extended into the bulk lipid environment. These “wedge” lipids likely enhance the inhibitor-induced conformational restriction of the TMD leading to the differential modulation of coupling pathways observed with the NBDs downstream. We suggest a novel inhibitory mechanism for tariquidar, and potentially for related third-generation Pgp inhibitors, where lipids are seen to enhance the inhibitory role in the catalytic cycle of membrane transporters.

Lipid invasion of P-glycoprotein, enhanced by binding of an inhibitor.     

Structural,magnetic and XPS studies of Sn0.95Co0.05O2-0.05 and Sn0.95Fe0.05O2-0.05 nanoparticles

Structural, microstructural, X-ray photoemission spectra (XPS) and magnetic properties of transition metal ion [5 mol% of Co (SC5) and Fe (SF5)]-doped SnO₂ nanoparticles have been studied. The SC5 and SF5 nanoparticles were synthesized by a chemical route using polyvinyl alcohol as surfactant. The doped SnO₂ crystallites were found to exhibit a tetragonal rutile structure and the average grains size was measured by the Scherer relation of X-ray diffraction. Transmission electron micrographs showed that the average grain size of SC5 is smaller than SF5. SC5 nanoparticles showed strong ferromagnetic behaviour but SF5 exhibited an F-centre exchange (FCE) mechanism. Temperature-dependent magnetization showed the values of phase transition temperature. XPS confirmed the presence of Sn–O–Co and Sn–O–Fe bonds in these SC5 and SF5 nanoparticles. The oxidation states of Sn, Co and Fe were found to be +4, +2 and +2, respectively, while the core level XPS peaks of Sn 3d, O 1s, Co 2p and Fe 2p were analyzed.     

An Experimental Study for Enhanced Availability of Free-Space Optics Systems over Hybrid Free-Space Optics/Radio Frequency Systems Using Switching Scheme Based on On–Off Keying and Multiple Pulse Position Modulation Schemes with Variable Data Rates

Abstract

Free-space optic links are degraded by such weather conditions as rain, fog, and atmospheric scintillation. The inherent advantages of free-space optic communication—providing higher data rates, security, and easy redeployment ability—motivate the avoidance of switching over free-space optic links to low bandwidth radio frequency links. This article establishes viable alternatives over free-space optics/radio frequency hybrid links to achieve higher capacity operation exploiting on–off keying and multiple pulse position modulation schemes with variable data rates to overcome the effect of fading due to adverse weather conditions. Results of an experimental free-space optical link at 1,550 nm are presented.     

Compressions of ta10w alloy kennertium w-2, and beryllium oxide to 4.5 GPa

Abstract

The volume compressions of a tantalum alloy, tungsten alloy, and beryllium oxide (BeO) have been derived from the measurements of axial shortenings of cylindrical specimens of these materials to 4.5 GPa at room temperature. These measurements were carried out in a solid pressure medium piston- cylinder apparatus.     

Effect of 100 keV N+ ion irradiation on the organic single crystal of hippuric acid for nonlinear optical applications

The potential organic nonlinear optical material of hippuric acid (HA) single crystal has been grown by the slow evaporation solution growth technique using N, N-dimethylformamide as the solvent. Single crystals of pure HA were irradiated at room temperature with 100 keV Nitrogen (N⁺) ions at fluence 1×10¹⁶ and 5×10¹⁶ ions/cm². The pure and irradiated HA single crystals were characterized by different characterization technique. The photoluminescence and UV–visible absorption were performed at room temperature. The crystalline perfection of the pure and irradiated single crystals has been examined by high-resolution X-ray diffraction. Vickers microhardness technique was used to study the effect on the mechanical strength of the crystal at different ion fluences. The structural changes were analyzed by powder X-ray diffraction analysis. The functional groups of the synthesized compound have been identified by Fourier transform infrared spectroscopy. The dielectric constant and dielectric loss as a function of frequency were analyzed at room temperature.     

Experimental observation of preferential solvation on a radical ion pair using MARY spectroscopy

The effect of preferential solvation on the exciplex luminescence detected magnetic field effect has been studied using magnetic-field-effect-on-reaction-yield (MARY) spectroscopy. By designing solvent mixtures which can provide a micro-environment around the magneto-sensitive radical ion pair (RIP) from highly heterogeneous to quasi-homogenous, the effect of the polarity scan on an absolute magnetic field effect (χ(E)) and B(1/2) (the field value marking half saturation) has been studied on the system 9,10-dimethylanthracene (fluorophore)/N,N'-dimethylaniline (quencher). While the trend in χ(E) (although with subtle differences) follows the usual norm of passing through maxima with increasing polarity, the B(1/2) values show either a large monotonic decrease (for heterogeneous solvents) or remain constant (for quasi-homogenous systems) with increasing polarity. The observations have been interpreted invoking the concept of amplification of the "cage-effect" as a result of preferential solvation in binary solvents and its influence on the decaying exciplex. The use of ternary solvents further confirms the proposed mechanism. Additionally electron hopping from the radical ion pair to the surrounding neutral donor molecules could also possibly contribute to the observed trend.     

Comparative studies on some metrics for external validation of QSPR models

Quantitative structure-property relationship (QSPR) models used for prediction of property of untested chemicals can be utilized for prioritization plan of synthesis and experimental testing of new compounds. Validation of QSPR models plays a crucial role for judgment of the reliability of predictions of such models. In the QSPR literature, serious attention is now given to external validation for checking reliability of QSPR models, and predictive quality is in the most cases judged based on the quality of predictions of property of a single test set as reflected in one or more external validation metrics. Here, we have shown that a single QSPR model may show a variable degree of prediction quality as reflected in some variants of external validation metrics like Q2(F1), Q2(F2), Q2(F3), CCC, and r2(m) (all of which are differently modified forms of predicted variance, which theoretically may attain a maximum value of 1), depending on the test set composition and test set size. Thus, this report questions the appropriateness of the common practice of the "classic" approach of external validation based on a single test set and thereby derives a conclusion about predictive quality of a model on the basis of a particular validation metric. The present work further demonstrates that among the considered external validation metrics, r2(m) shows statistically significantly different numerical values from others among which CCC is the most optimistic or less stringent. Furthermore, at a given level of threshold value of acceptance for external validation metrics, r2(m) provides the most stringent criterion (especially with Δr2(m) at highest tolerated value of 0.2) of external validation, which may be adopted in the case of regulatory decision support processes.     

Influence of density-dependent symmetry energy on elliptical flow

The effect of density-dependent symmetry energy on elliptical flow is studied using the isospin-dependent quantum molecular dynamics model (IQMD). We have used the reduced isospin-dependent cross-section with hard (H) equation of state to study the sensitivity of the elliptical flow to symmetry energy in the energy range 50-1000MeV/nucleon. The elliptical flow becomes zero at a particular energy termed as transition energy. A systematic effort has been made to pin down the transition energy for the density-dependent symmetry energy.