Computational Approaches to Discover Novel Natural Compounds for SARS-CoV-2 Therapeutics

Scientists all over the world are facing a challenging task of finding effective therapeutics for the coronavirus disease (COVID-19). One of the fastest ways of finding putative drug candidates is the use of computational drug discovery approaches. The purpose of the current study is to retrieve natural compounds that have obeyed to drug-like properties as potential inhibitors. Computational molecular modelling techniques were employed to discover compounds with potential SARS-CoV-2 inhibition properties. Accordingly, the InterBioScreen (IBS) database was obtained and was prepared by minimizing the compounds. To the resultant compounds, the absorption, distribution, metabolism, excretion and toxicity (ADMET) and Lipinski's Rule of Five was applied to yield drug-like compounds. The obtained compounds were subjected to molecular dynamics simulation studies to evaluate their stabilities. In the current article, we have employed the docking based virtual screening method using InterBioScreen (IBS) natural compound database yielding two compounds has potential hits. These compounds have demonstrated higher binding affinity scores than the reference compound together with good pharmacokinetic properties. Additionally, the identified hits have displayed stable interaction results inferred by molecular dynamics simulation results. Taken together, we advocate the use of two natural compounds, STOCK1N-71493 and STOCK1N-45683 as SARS-CoV-2 treatment regime.     

Determination of palladium in synthetic nuclear wastes by differential pulse voltammetry

A novel method for the determination of palladium in synthetic nuclear waste samples has been developed using a computerized voltammetric analyzer. The electrode system consists of hanging mercury drop electrode (HMDE)/glassy carbon/Ag-AgCl electrode. Various experimental conditions including electrolyte type, pH and concentration have been optimized, leading to a detection limit of 40 ng/ml. The mixture of 4^.10^-3M citric acid + 2^.10^-2M ammonia-ammonium chloride buffer + 4^.10^-3M EDTA was used as a supporting electrolyte at pH 9.0. Standard addition method was employed to determine the concentration of palladium present in the nuclear waste sample. The relative standard deviation of the proposed method was found to be 8% at 40 ng/ml of palladium content. The method is direct, simple, rapid and free from any possible interference.     

Transport of liquids using superhydrophobic aerogels

The experimental results of the studies on the transportation of water droplets on a superhydrophobic silica aerogel-powder-coated surface are reported. The superhydrophobic silica aerogels were prepared using sol-gel processing of methyltrimethoxysilane (MTMS) precursor, methanol (MeOH) solvent, and base (NH4OH)-catalyzed water followed by supercritical drying using methanol solvent. The molar ratio of NH4OH/MTMS, H2O/MTMS, and MeOH/MTMS were varied from 1.7x10(-1) to 3.5x10(-1), 2 to 8, and 1.7 to 14, respectively, to find out the best-quality aerogels in terms of higher hydrophobicity and high droplet velocity. A specially built device was used for the measurement of velocity of water droplet of size 2.8 mm (+/-0.2 mm) on an inclined surface coated with superhydrophobic aerogel powder. Liquid marbles were prepared by rolling water droplets on aerogel powder and the marble(s) velocities on a noncoated inclined surface were compared with that of the water droplets. It was observed that the microstructure of the aerogel affects the droplet as well as marble velocities considerably. For an aerogel with uniform and smaller particles, the water droplet and marble velocities were observed to be maximum, i.e., 144 and 123 cm/s, respectively, whereas for the aerogels with bigger and nonuniform particles, the water droplet and marble velocities were observed to be minimum, i.e., 92 and 82 cm/s, respectively. The results have been discussed by taking into account the contact angles and microstructural observations.     

Compensation for surface coil sensitivity variation in magnetic resonance imaging

A procedure which incorporates the aspects of both correction matrix and digital filtering to compensate for sensitivity fall-off of the surface coil has been applied to clinical imaging. In this method the surface coil profile is determined using the surface coil image and a crude body coil image. Our results indicate that the corrected surface coil image exhibits the homogeneity of the body coil image while essentially preserving the sensitivity of the surface coil image.     

Efficient synthesis of indolizines and new imidazo[1,2-a]pyridines via the expected cyclization of aromatic cycloimmonium ylides with electron deficient alkynes and ethyl cyanoformate

Aromatic cycloimmonium ylides underwent smooth cyclization with electron deficient alkynes in presence of anhydrous K₂CO₃ in DMF solvent at room temperature to afford substituted indolizines. Ylides have also undergone expected cyclization with ethyl cyanoformate to produce imidazo[1,2-a]pyridines. The structures of these newly synthesized compounds have been confirmed by spectroscopic techniques and X-ray diffraction studies.     

Analysis of refractometric fiber optic state-of-charge (SOC) monitoring sensor for lead acid battery

In situ monitoring of the state of charge (SOC) of lead acid battery is important to understand the residual electrical energy. Usage of battery reduces the charge content of the active electrolyte which in turn changes its refractive index. This paper reports refractometric fiber optic sensor developed for on-line monitoring of SOC. The SOC is monitored during discharging phases of the battery using the developed fiber optic sensor probe along with terminal voltage, temperature and depth of discharge using a LABVIEW based data acquisition system. The paper gives the working principle, design and construction details, results and calibration of the fiber optic sensor (FOS) probe. The in situ monitoring capability of the developed FOS is demonstrated in comparison with the contemporary off-line methods of specific gravity and terminal voltage measurements.     

Arrays of magnetic nanoparticles capped with alkylamines

Magnetic metal and metal oxide nanoparticles capped with alkylamines have been synthesized and characterized by transmission electron microscopy. X-ray diffraction, energy dispersive X-ray analysis and magnetization measurements. Core-shell Pd-Ni particles with composition, Pd₅₆₁Ni₃₀₀₀, (diameter ∼3.3 nm) are superparamagnetic at 5 K and organize themselves into two-dimensional crystalline arrays. Similar arrays are obtained with Pd₅₆₁Ni₃₀₀₀Pd₁₅₀₀ nanoparticles containing an additional Pd shell. Magnetic spinel particles of γ-Fe₂O₃, Fe₃O₄ and CoFe₂O₄ of average diameters in the 4–6 nm range coated with octylamine are all supermagnetic at room temperature and yield close-packed disordered arrays. Relatively regular arrays are formed by dodecylaminecapped Fe₃O₄ nanoparticles (∼8.6 nm diameter) while well-ordered hexagonal arrays were obtained with octylamine-covered Co₃O₄ nanoparticles (∼4.2 nm diameter).     

Imaging the neural circuitry and chemical control of aggressive motivation

Background  

With the advent of functional magnetic resonance imaging (fMRI) in awake animals it is possible to resolve patterns of neuronal activity across the entire brain with high spatial and temporal resolution. Synchronized changes in neuronal activity across multiple brain areas can be viewed as functional neuroanatomical circuits coordinating the thoughts, memories and emotions for particular behaviors. To this end, fMRI in conscious rats combined with 3D computational analysis was used to identifying the putative distributed neural circuit involved in aggressive motivation and how this circuit is affected by drugs that block aggressive behavior.