Parallel time integration with multigrid

With current trends in computer architectures leading towards systems with more, but not faster, processors, faster time-to-solution must come from greater parallelism. We present a family of truly multilevel approaches to parallel time integration based on multigrid reduction (MGR) principles. The resulting multigrid-reduction-in-time (MGRIT) algorithms are non-intrusive approaches, which directly use an existing time propagator and, thus, can easily exploit substantially more computational resources then standard sequential time-stepping. Furthermore, we demonstrate that MGRIT offers excellent strong and weak parallel scaling up to thousands of processors for solving diffusion equations in two and three space dimensions. (© 2014 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Substituted Esters of Coumarin-3-phosphonic Acid—Linear-Polarized IR-Spectroscopic Elucidation

Correlation between the structure and IR-spectroscopic properties of two halogen and one amino substituted esters of coumarin-3-phosphonic acid has been studied by means of linear-polarized IR-spectroscopy of oriented colloid suspensions in nematic host. The influence of the ester group on the peak positions of the IR-characteristic bands of these derivatives and in particular, on phosphorus group is investigated by a comparison with the data for corresponding coumarin-3-phosphonic acids. Theoretical quantum chemical DFT calculations (B3LYP/6-311++G??) are carried out, thus supporting the experimental assignment of the IR-bands and predicting the electronic structure of all of the compounds studied.     

Activity and selectivity of zeolite MCM-22 catalysts in the disproportionation of toluene

Zeolite precursor MCM-22 samples were prepared by hydrothermal synthesis. The H-zeolites, obtained from the precursors, were characterized by scanning electron microscopy (SEM), Fourier-transform infrared (FT-IR) spectroscopy, and by their activity in the title reaction. Despite of the lower Br?nsted acid site concentration of the zeolite having smaller crystallites, showed higher activity, while the zeolite, having larger crystals were more selective for p-xylene formation.     

Density functional study of hydrogen bond formation between methanol and organic molecules containing Cl, F, NH2, OH, and COOH functional groups

Various hydrogen-bonded complexes of methanol with different proton accepting and proton donating molecules containing Cl, F, NH(2), OH, OR, and COOH functional groups have been modeled using DFT with hybrid B3LYP and M05-2X functionals. The latter functional was found to provide more accurate estimates of the structural and thermodynamic parameters of the complexes of halides, amines, and alcohols. The characteristics of these complexes are influenced not only by the principle hydrogen bond of the methanol OH with the proton acceptor heteroatom, but also by additional hydrogen bonds of a C-H moiety with methanol oxygen as a proton acceptor. The contribution of the former hydrogen bond in the total binding enthalpy increases in the order chlorides < fluorides < alcohols < amines, while the contribution of the second type of hydrogen bond increases in the reverse order. A general correlation was found between the binding enthalpy of the complex and the electrostatic potential at the hydrogen center participating in the formation of the hydrogen bond. The calculated binding enthalpies of different complexes were used to clarify which functional groups can potentially form a hydrogen bond to the 2'-OH hydroxyl group in ribose, which is strong enough to block it from participation in the intramolecular catalytic activation of the peptide bond synthesis. Such blocking could result in inhibition of the protein biosynthesis in the living cell if the corresponding group is delivered as a part of a drug molecule in the vicinity of the active site in the ribosome. According to our results, such activity can be accomplished by secondary or tertiary amines, alkoxy groups, deprotonated carboxyl groups, and aliphatic fluorides, but not by the other modeled functional groups.     

Linearly polarized IR-spectroscopy of partially oriented solids as a colloid suspension in nematic host: a tool for spectroscopic and structural elucidation of the embedded chemicals

Colloid suspensions in nematic liquid crystal were employed for the first time in 2004 as a tool for the partial orientation of solids, to be examined by linearly polarized IR-(IR-LD) spectroscopy. It has been found is found that a partial orientation (15–20%) of suspended particles, is adequate for the recording of reasonable linearly polarized IR-spectra is achieved when: 5 ± 1% by weight of the given solid compound (organic, inorganic, transition metal complex or glass) with particle size within the limits 0.3–0.9 μm is mixed with a nematic liquid crystal substance (ZLI 1695, ZLI 1538 or MLC 6815) suitable for IR spectroscopy and the slightly viscous suspension obtained is phase pressed between two KBr-plates. These latter are roughened in one direction prior to use with fine sandpaper (C800) (size 5 μm). Then, the KBr-plattes and pressed suspension are moved repeatedly with 3 μm/s for 100 times. The optimal cell thickness is 100 μm. If mathematical procedures are used for polarized IR-spectra interpretation, then it is possible to perform structural elucidation of the embedded compounds, independently of their melting point, crystalline or amorphous state, and the quality of the monocrystals or polycrystalline of the e sample. The method permits the study of organic and inorganic compounds, transition metal complexes and glasses. Here we will discuss the fundamental questions concerning the above state such as the morphology of the suspended particles, the particle size, the influence of the physical chemistry properties of liquid crystal medium on the degree of orientation of suspended particles; the velocity of the shearing of the suspension, the degree of the roughening of the KBr-plates and their effects on the degree of orientation, the influence of the space group on the orientation parameter, the nature and balance of the forces acting on the suspended particles; their degree of orientation, the mathematical model used. Conventional and linearly polarized IR-spectroscopy and electron microscopy are used for elucidation of these points. Statistical approaches have also been applied in order to estimate the impact of the experimental parameters (size, velocity, thickness) on the IR-signal for each of the 13 systems studied. An experimental design of the type involving full factorial design on two levels of variation of the input factors is presented.     

Spectroscopic and structural elucidation of 4-dimethylaminopyridine and its hydrogensquarate

A distortion of the aromatic character and stabilization of the imino-form as a result of the protonation of 4-dimethylaminopyridine was established by IR-, UV- and 1H NMR-spectral analysis of 4-diaminopyridinium hydrogensquarate. Quantum chemical calculations were carried out at MP2 and B3LYP levels of theory and a 6-311++G** basis set with a view to determining the changes in geometrical parameters and IR-spectroscopic characteristics resulting from Npy protonation. Linear-dichroic IR-spectroscopy coupled with the orientation techniques of solid samples as liquid crystal suspensions and melted solid polycrystalline films was applied for the identification of the IR-bands, characteristic for the structural fragments of the neutral and imino-form of the pyridine derivative. The spectral results were compared with the structure, obtained by a single crystal X-ray analysis. The salt contains dimmers of hydrogensquarate anions and Npy protonated cations of which the former are stabilized by strong intermolecular OH...O interactions (2.552 angstroms and 143.1(2) degrees). The 4-diaminopyridinium cation interacts with the anion through moderate NH...O bonds (2.729 angstroms and 165.0(0) degrees ). Individual cations are pi-pi stacked with their neighbors at a distance of 3.406 angstroms.     

Spectrophotometric study of the solubility and the protolytic properties of 1-(2-pyridylazo)-2-naphthol in different ethanol–water solutions

The solubility and the protolytic constants of 1-(2-pyridylazo)-2-naphthol (PAN) have been accurately determined at temperatures between 20.0 and 30.0°C in ethanol–water solutions with ethanol concentrations ranging from 10.0% to 95.0% (v/v). The measurement of the protolytic constants is based on the spectrophotometric determination of the concentrations of the corresponding conjugate acid–base pairs in ethanol–water solutions containing PAN and hydrochloric acid or sodium hydroxide. The traditionally used pH measurements in such studies in non-aqueous solutions are thus avoided. The solubility and the protolytic constants of PAN in pure water have been calculated by extrapolating the ethanol–water results to pure water where PAN is practically insoluble. The determination of the thermodynamic data mentioned above is necessary for elucidating the interactions of PAN with various metal ions in solutions and in cation-exchange membranes (e.g., Nafion^®) used as PAN-based optodes.     

Determination of ammonia in beers by pervaporation flow injection analysis and spectrophotometric detection

A pervaporation flow injection (PFI) method is described for the determination of ammonia in beers. After injecting the sample into a NaOH donor solution, ammonia and other volatiles are transferred in the pervaporation unit from the donor stream to an acceptor stream containing sodium salicylate and nitroprusside, which subsequently mixes with alkaline sodium dichloroisocyanurate to allow the classical Berthelot reaction to take place. The blue-coloured complex formed is monitored spectrophotometrically at 655 nm. A linear calibration curve with a range of 0.1–40 mg l⁻¹ was obtained. The method has a detection limit of 0.05 mg l⁻¹ and is capable of a sampling frequency of 11 h⁻¹ at 4 mg l⁻¹ ammonia. It was applied successfully to the determination of ammonia in synthetic samples and unfiltered lager beers. The advantages of the present method over the ammonia ion-selective electrode method and the PFI system based on mixed indicator detection are discussed.