Biosynthetic Conclusions from the Functional Dissection of Oxygenases for Biosynthesis of Actinorhodin and Related Streptomyces Antibiotics

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Highlights? ActVA-ORF5 is a flavin-dependent monooxygenase required for actinorhodin biosynthesis ? ActVA-ORF5 and its three close homologs were functionally dissected ? ActVA-ORF5 and Gra-21 are bifunctional at C-6/C-8, while Med-7 acts only for C-6 ? AlnT exhibits different regiospecificity for oxidation of tricyclic substrates     

A screw-shaped alignment of pyrene using m-calix[3]amide

m-Calix[3]amide bearing three pyrenes (1a) was prepared by the condensation reaction of 3-nonylaminobenzoic acid derivative using Ph₃PCl₂. Pyrenyl groups were found to be aligned in the screw-like fashion by m-calix[3]amide as confirmed by the X-ray crystallography. Aromatic proton signals observed at the up-field region in the ¹H NMR spectrum at low temperature indicated that pyrenyl groups in 1a are aligned in close proximity in THF solution. UV–vis absorption and fluorescence emission spectra did not show marked peak shift nor concentration fluorescence quenching compared with reference compounds implying no significant electronic interaction between pyrenyl groups. These results can be explained by the steric effect of the m-calix[3]amide platform. On the other hand, an excimer emission was observed for m-calix[3]amide having a flexible spacer between pyrene and m-calix[3]amide (1b).     

Colloidal crystallization of thermo-sensitive gel spheres of poly (<Emphasis Type="Italic">N</Emphasis>-isopropyl acrylamide). Influence of gel size

Influence of the gel size on the morphology, phase diagram, and reflection spectroscopy of the colloidal crystals of thermo-sensitive gel spheres, poly (N-isopropylacrylamide) (pNIPAm), was discussed by adding the data of two gel samples of pNIPAm(400–5) and pNIPAm(600–5) of 412 nm (at 25 °C) and 220 nm (at 45 °C) and of 517 nm (at 20 °C) and 294 nm (at 45 °C), respectively. Colloidal single crystals formed, but not so large compared with the giant crystals of small pNIPAm gels reported previously. The suspensions even with ion-exchange resins were turbid and hard to observe the single crystals clearly with the naked eyes as gel size increased. The critical concentration of melting decreased sharply as the suspensions were deionized with coexistence of the mixtures of cation- and anion-exchange resins. The critical concentration increased as the gel size increased and/or dispersion temperature increased. Density of the gel spheres increased as their size increased. These results demonstrated that the colloidal crystallization takes place by the extended electrical double layers formed around the gel spheres in addition of the excluded volume effect of the gels. Contribution of the electrical double layers on the crystallization increased sharply as temperature increased and gel concentration decreased, respectively. The contribution also increased slightly as sphere size increased, when comparison was made at the same gel concentration in wt.%. The present work clarified that the colloidal interfaces, which are inevitable for the formation of the electrical double layers, are formed between the water phase and gel spheres, though the gel spheres contain a lot of water molecules at the inner sphere region.     

Structure and crystallization of sub-elementary fibrils of bacterial cellulose isolated by using a fluorescent brightening agent

The structure and crystallization of carefully isolated sub-elementary fibrils (SEFs) of bacterial cellulose have been investigated using TEM, WAXD, and high-resolution solid-state ¹³C NMR. The addition of a suitable amount of fluorescent brightener (FB) to the incubation medium of Acetobacter xylinum effectively suppressed the aggregation of the SEFs into the microfibrils, as previously reported. However, this study confirmed for the first time that serious structural change in the SEFs occurs during the removal of excess FB by washing with buffer solutions having pH values higher than 6 or with the alkaline aqueous solution that was frequently used in previous studies. In contrast, the isolation of unmodified SEFs was successfully performed by utilizing a washing protocol employing pH 7 citrate–phosphate buffer solution containing 1% sodium dodecyl sulfate. High-resolution solid-state ¹³C NMR and WAXD measurements revealed that the SEFs thus isolated are in the noncrystalline state in which the pyranose rings of the almost parallel cellulose chains appear to be stacked on each other. The respective CH₂OH groups of the SEFs adopt the gt conformation instead of the tg conformation found in cellulose I _α and I _β crystals, and undergo significantly enhanced molecular motion in the absence of intermolecular hydrogen bonding associated with these groups. The main chains are also subject to rapid motional fluctuations while maintaining the parallel orientation of the respective chains, indicating that the SEFs have a liquid crystal-like structure with high molecular mobility. Moreover, the SEFs crystallize into cellulose I _β when the FB molecules that may adhere to the surface of the SEFs are removed by extraction with boiling 70 v/v% ethanol and 0.1N NaOH aqueous solution. On the basis of these results, the crystallization of the SEFs into the I _α and I _β forms is discussed, including the possible formation of the crystalline-noncrystalline periodic structure in native cellulose.     

Interactions between temperature-sensitive hydrogel microspheres and granulocytes

Poly(N-isopropylacrylamide) (PNIPAM) has a low critical solution temperature (LCST) at 32°C in water and the hydrophilicity changes through the LCST. The microspheres whose surface was composed of PNIPAM exhibited phase transition behavior around 32°C. Therefore, the interactions between PNIPAM micropheres and granulocytes depended on the temperature. That is, the oxygen consumption and active oxygen production by cells in contact with PNIPAM-containing microspheres and adhesion of the microspheres to the cell surface were more enhanced above the LCST of PNIPAM than below it, whereas no significant temperature dependence of cell–microspheres interaction was observed in nonthermosensitive microsphere systems. It was suggested that the function of cells could be controlled with temperature using the temperature-sensitive microspheres.     

(Z)-N-(4-Decenoyl)homoserine lactone, a new quorum-sensing molecule, produced by endobacteria associated with Mortierella alpina A-178

N-Acylhomoserine lactones (AHLs) are the conserved quorum-sensing signal molecules in Gram-negative bacteria. (Z)-N-(4-Decenoyl)homoserine lactone (1), a new AHL, was isolated from the culture broth of the fungus Mortierella alpina A-178 harboring bacterial endosymbionts, called endobacteria. The structure and absolute configuration of 1 were elucidated by EI-MS, chemical synthesis, and chiral GC analysis. The compound induced the expression of a QS-regulated reporter gene in Agrobacterium tumefaciens NTL4, although its activity was lower than that of N-decanoylhomoserine lactone (6).     

Recent progress of on-line sample preconcentration techniques in microchip electrophoresis

This review highlights recent developments and applications of on-line sample preconcentration techniques to enhance the detection sensitivity in microchip electrophoresis (MCE); references are mainly from 2008 and later. Among various developed techniques, we focus on the sample preconcentration based on the changes in the migration velocity of analytes in two or three discontinuous solutions system, since they can provide the sensitivity enhancement with relatively easy experimental procedures and short analysis times. The characteristic features of the on-line sample preconcentration applied to microchip electrophoresis (MCE) are presented, categorized on the basis of "field strength-" or "chemically" induced changes in the migration velocity. The preconcentration techniques utilizing field strength-induced changes in the velocity include field-amplified sample stacking, isotachophoresis and transient-isotachophoresis, whereas those based on chemically induced changes in the velocity are sweeping, transient-trapping and dynamic pH junction.     

Method validation by interlaboratory studies of improved hydrophilic oxygen radical absorbance capacity methods for the determination of antioxidant capacities of antioxidant solutions and food extracts

Hydrophilic oxygen radical absorbance capacity (H-ORAC) is a method for evaluating antioxidant capacities of solutions of hydrophilic compounds. In this study, we improved the original method for H-ORAC determination, and evaluated the precision of the two improved methods (methods A and B) by interlaboratory studies using 5 antioxidant solutions and 5 food extracts as test samples. An interlaboratory study of method A, in accordance with the harmonized protocol, demonstrated satisfactory performance (intermediate precision relative standard deviations (RSD(int)) ranging from 4.6 to 18.8%; the reproducibility relative standard deviations (RSD(R)) ranging from 7.0 to 21.1%, and the HorRat values ranging from 0.40 to 1.93). However, methodological problems remained, and a further improved method, method B, was thus developed. An interlaboratory study of method B by 5 participating laboratories showed better intermediate precision and reproducibility (RSD(int) and RSD(R) ranging from 1.8 to 9.4%, and from 4.4 to 13.8%, respectively), and all HorRat values for the test samples were less than 1.3, suggesting good performance for the H-ORAC measurement.