Efficient Light-Harvesting Antennae Resulting from the Dense Organization of Dyes into DNA Junctions through d-Threoninol

Herein we report the construction of efficient light-harvesting antennae by hybridization of DNA oligonucleotides containing high densities of fluorophores into DNA junctions through d -threoninol. Six pyrene donors could be incorporated into each arm without self-quenching. A perylene acceptor was located at the center of the junction. Antenna effects of a duplex and three- to eight-way junctions were systematically compared. Six- and eight-way junctions had the highest antenna effects, and their effective absorption coefficients were 8.5 times higher than that of perylene. Interestingly, even-numbered junctions had higher efficiencies than odd-numbered junctions. Nondenaturing gel analyses and fluorescence lifetime measurements demonstrated that the strong odd–even effects were derived from differences in the stability of junctions. The results presented will guide the design of efficient artificial photosynthetic systems.     

Exhaustive search of the configurational space of heat-shock protein 90 with its inhibitor by multicanonical molecular dynamics based dynamic docking

Multicanonical molecular dynamics based dynamic docking was used to exhaustively search the configurational space of an inhibitor binding to the N-terminal domain of heat-shock protein 90 (Hsp90). The obtained structures at 300 K cover a wide structural ensemble, with the top two clusters ranked by their free energy coinciding with the native binding site. The representative structure of the most stable cluster reproduced the experimental binding configuration, but an interesting conformational change in Hsp90 could be observed. The combined effects of solvation and ligand binding shift the equilibrium from a preferred loop-in conformation in the unbound state to an α-helical one in the bound state for the flexible lid region of Hsp90. Thus, our dynamic docking method is effective at predicting the native binding site while exhaustively sampling a wide configurational space, modulating the protein structure upon binding.     

Third-order aberration analysis of an off-axial optical system

The aberration theory applied to co-axial optical systems is extended to off-axial systems, for which third-order aberration coefficients are considered. The derived aberrations are analyzed using three-dimensional ray bundles, spot diagrams, and image charts, and classified in relation to the system symmetry. This theory is very useful for optical designers, allowing them to clarify the relationship between the structures of off-axial optical systems and the corresponding off-axial aberrations.     

Flame atomic absorption spectrometric determination of lead in waste water and effluent after preconcentration using a rapid coprecipitation technique with gallium phosphate

A determination method for lead in waste water and effluent was studied using flame atomic absorption spectrometry after preconcentration of lead by the rapid coprecipitation technique with gallium phosphate. Lead ranging from 0.5 to 50 μg was quantitatively coprecipitated with gallium phosphate from 100–150 mL sample solution (pH ∼5). The presence of gallium phosphate did not affect the atomic absorbance of lead. Since the concentration of gallium in the final sample solution is also measurable by flame atomic absorption spectrometry at 250.0 nm without further dilution, the rapid coprecipitation technique, which does not require complete collection of the precipitate, becomes possible using a known amount of gallium and measuring the concentrations of both lead and gallium in the final sample solution by flame atomic absorption spectrometry. The 32 diverse ions tested gave no significant interferences in the lead determination. The method proposed here is rapid and has good reproducibility. Received: 16 August 1999 / Revised: 6 October 1999 / Accepted: 14 October 1999     

Detection of N-nitroso-bile acids at 285 nm in reverse-phase HPLC

In the present study, we developed a novel, simple, and specific detection method using an RP-HPLC at UV 285 nm for the separation and quantification of N-nitroso-bile acids. First, we found that N-nitroso-bile acids have a specific spectrophotometric absorbance at 285 nm. Using this 285 nm detection system, we could especially measure N-nitroso-bile acids, even in co-existence of non-N-nitroso-bile acids. Next, we observed the decomposition of N-nitroso-glychocholate under alkaline, acidic, and neutral conditions. N-nitroso-glychocholate rapidly decomposed under alkaline conditions (pH 9) (t(1/2) = 0.96 h), but remained fairly stable under acidic (pH 2) (t(1/2) = 12.8 h) and neutral (pH 7) (t(1/2) = 7.8 h) conditions. This study is the first report, which simply and specifically analyzes N-nitroso-bile acids using an RP-HPLC system.     

Reaction mechanism for target-like products from197Au target bombarded with12C ions of energies above 100 MeV/u

Target-like products, that is,^191–200Au,^185–200Pt, and^183–195Ir, from¹⁹⁷Au target bombarded with¹²C ions at the energies of 180, 230, and 400 MeV/u were measured by using off-line gamma-ray spectrometry combined with chemical separation procedures. Spallation systematics by Rudstam reproduces well the measured cross sections for formation of platinum and iridium isotopes. It was found that the cross sections of gold nuclides increase with increase of the incident energy in the range studied and they are enhanced if compared with the reported proton-induced reaction of gold at a similar incident energy. It is suggested that the electromagnetic dissociation process plays a role for production of such gold nuclides.     

Synthesis and photoinduced electron transfer processes of rotaxanes bearing [60]fullerene and zinc porphyrin: effects of interlocked structure and length of axle with porphyrins

Three rotaxanes, with axles with two zinc porphyrins (ZnPs) at both ends penetrating into a necklace pending a C60 moiety, were synthesized with varying interlocked structures and axle lengths. The intra-rotaxane photoinduced electron transfer processes between the spatially positioned C60 and ZnP in rotaxanes were investigated. Charge-separated (CS) states (ZnP*+, C60*-)rotaxane are formed via the excited singlet state of ZnP (1ZnP*) to the C60 moiety in solvents such as benzonitrile, THF, and toluene. The rate constants and quantum yields of charge separation via 1ZnP decrease with axle length, but they are insensitive to solvent polarity. When the axle becomes long, charge separation takes place via the excited triplet state of ZnP (3ZnP*). The lifetime of the CS state increases with axle length from 180 to 650 ns at room temperature. The small activation energies of charge recombination were evaluated by temperature dependence of electron-transfer rate constants, probably reflecting through-space electron transfer in the rotaxane structures.     

Single molecular multianalyte sensor: jewel pendant ligand

[structure: see text] The jewel pendant ligand has multiple chromogenic units combined in a single molecule with the dyes linked to a semiselective binding site by three heteroatoms (O, N, S) having different HSAB characteristics, to indicate diverse response to individual transition metal ions. Using a single-molecular multianalyte sensor, multiple analytes could be determined with a minimal sensing system.     

Cyclopropanation of electron-deficient alkenes with activated dibromomethylene compounds mediated by lithium iodide or tetrabutylammonium salts

Reactions of electron-deficient alkenes with dibromomethylene compounds activated by cyano and ester groups were promoted by LiI or tetrabutylammonium bromide to afford the corresponding cyclopropanes in high yields.