A convenient synthesis of 1,3-oxazolidin-4-ones and 1,3-oxazin-4-ones

1,3-Oxazolidin-4-ones and 1,3-oxazin-4-ones were synthesized by formal cyclocondensation of imines with α- or β-hydroxy acids.     

Substituent Effects on the C-C Bond Strength, 15[1] Geminal Substituent Effects, 7[2]. Thermochemistry and Thermal Decomposition of Alkyl-substituted Tricyanomethyl Compounds

The thermolysis reactions of the tricyanomethyl compounds 10a-c were studied in solution. 2,2-Dicyano-3-methyl-3-phenylbutyronitrile ( 10a ) and 2,2-dicyano-3-methyl-3-(4-nitrophenyl)butyronitrile ( 10b ) decomposed heterolytically into carbenium ions and (CN)₃C⁻ anions, while 9-methyl-9-(tricyanomethyl)fluorene ( 10c ) underwent about 11% homolytic C-C bond cleavage into 9-methyl-9-fluorenyl- and tricyanomethyl radicals. The rates of the homolysis were determined by a radical scavenger procedure under conditions of pseudozero order kinetics. From the temperature effect on the rate constants the activation parameters were determined [ΔH ( 10c ) = 155· 2 kJ mol⁻¹, ΔS ( 10c ) = 58· 5 J mol⁻¹ K⁻¹]. Standard enthalpies of formation ΔH (g) were determined for 2,2-dicyanopropionitrile ( 2 ) (422.45 kJ mol⁻¹), 2,2-dicyanohexanenitrile ( 3 ) (349.74 kJ mol⁻¹), 2,2-dicyano-3-phenylpropionitrile ( 4 ) (540.75 kJ mol⁻¹), 2-butyl-2-methylhexanentrile ( 5 ) (-133.20 kJ mol⁻¹), 2,2-dimethylpentanenitrile ( 6 ) (-45.78 kJ mol⁻¹), and 2-methylbutyronitrile ( 7 ) (2.44 kJ mol⁻¹) from the enthalpies of combustion and enthalpies of sublimation/vaporization. From these data and known Δ (g) values for alkanenitriles and -dinitriles, thermochemical increments for ΔH (g) were derived for alkyl groups with one, two, or three cyano groups attached. The comparison of these increments with those of alkanes reveals a strong geminal destabilization, which is interpreted by dipolar repulsions between the cyano groups. - From ΔH (g) of 10c and ΔH of its homolytic decomposition the radical stabilization enthalpy for the tricyanomethyl radical 1 RSE ( 1 ) = -18 kJ mol⁻¹ was determined. Thus, 1 is destabilized, in comparison with the RSEs of tertiary α-cyanalkyl (23 kJ mol⁻¹) and α,α-dicyanoalkyl (27 kJ mol⁻¹) radicals, which were recalculated from bond homolysis measurements^[4] and the new thermochemical data. This change of RSE on increasing the number of α-cyano groups is discussed as the result of the additive contributions by resonance stabilization and increasing destabilization by dipolar repulsion. The amount of the dipolar energies was estimated by molecular mechanics (MM2).     

A hexa-peri-hexabenzocoronene cyclophane: an addition to the toolbox for molecular electronics

Cyclophanes with the largest-to-date polycyclic aromatic hydrocarbon (hexa-peri-hexabenzocoronene, HBC) to be entrained in such a structural motif are reported. The two disks are covalently captured by intermolecular ring-closing olefin metathesis of dienes in good yield. DSC, optical microscopy, and WAXD show the new cyclophanes to self-assemble to thermotropic columnar liquid crystal mesophases similar to monomeric analogues. Solution spectroscopic studies reveal that the two disks within a single unit lie face-to-face, with a small average lateral offset. Self-assembly into two-dimensional crystals at a solid-liquid interface was visualized by STM, and the electrical properties of single molecules were assessed by scanning tunneling spectroscopy revealing a diode-like behavior which is similar to that previously reported for single HBC disks, laying the groundwork for future electrical interrogations of dynamic molecular complexes.     

Automated multi-attribute method sample preparation using high-throughput buffer exchange tips

Rationale

The multi-attribute method (MAM) has become a valuable mass spectrometry (MS)-based tool that can identify and quantify the site-specific product attributes and purity information for biotherapeutics such as monoclonal antibodies (mAbs) and fusion molecules in recent years. As we expand the use of the MAM at various stages of drug development, it is critical to enhance the sample preparation throughput without additional chemical modifications and variability.

Methods

In this study, a fully automated MAM sample preparation protocol is presented, where rapid desalting in less than 15 minutes is achieved using miniaturized size-exclusion chromatography columns in pipette tips on an automated liquid handler. The peptide samples were analyzed using an electrospray ionization (ESI) orbitrap mass spectrometer coupled to an ultra-high-performance liquid chromatography (UHPLC) system with a dual column switching system.

Results

No significant change was observed in product attributes and their quantities compared with manual, low-artifact sample preparation. The sample recovery using the buffer exchange tips was greatly enhanced over the manual spin cartridges while still demonstrating excellent reproducibility for a wide variety of starting sample concentrations. Unlike a plate desalting system, the individual columns provide flexibility in the number of samples prepared at a time and sample locations within plates.

Conclusions

This automated protocol enables the preparation of up to 96 samples with less “at-bench” time than the manual preparation of a smaller batch of samples, thereby greatly facilitating support of process development and the use of the MAM in quality control.

     

Rhodopsin exhibits a preference for solvation by polyunsaturated docosohexaenoic acid

An all-atom molecular dynamics simulation of rhodopsin in a membrane environment has been carried out with lipid composition similar to that of the retinal membrane. The initial conformation of the protein was taken from the X-ray crystallographic structure (1F88), while those of the lipids came from a previous molecular dynamics simulation. During the course of the 12.5 ns simulation, the initially randomly placed lipids adopt an anisotropic solvation structure around the protein. The lipids, having one saturated stearic acid chain and one polyunsaturated docosohexaenoic acid chain with a zwitterionic phosphatidylcholine headgroup, arrange themselves to maximize contact between the polyunsaturated chain and the protein surface. This organization is driven by energetically favorable interactions between the transmembrance helices and the docosohexaenoyl chains that are largely of the van der Waals type. These observations are consistent with various experimental studies on rhodopsin and other G-protein coupled receptors and with the picture of extreme flexibility in polyunsaturated fatty acid chains that has arisen from recent NMR and computational work.     

Synthesis,Crystal Structure,and Spectral Properties of a Cobalt(II) Complex with N‐Salicylidene‐p‐Toluidine

The complex Co(C₁₄H₁₃NO)₂Cl₂ with the protonated N‐salicylidene‐p‐toluidine ligand was synthesized from an ethanolic solution of CoCl₂·6H₂O and N‐salicylidene‐p‐toluidine. The crystal structure was determined from X‐ray single crystal data (monoclinic, space group Cc, a = 1496.2(3) pm, b = 1257.4(4) pm, c = 1544.6(3) pm, β = 115.01(1)°, Z = 4). Co²⁺ adopts a distorted tetrahedral geometry. The UV‐Vis and IR spectra of the complex are discussed.     

Cyclohexylphosphonic acid

The title compound, C₆H₁₃O₃P, displays a crystallographic mirror plane. Bond lengths in the phosphonic acid moiety are P—O = 1.5557 (13) Å and P=O = 1.5089 (18) Å. The mol­ecules are linked via intermolecular hydrogen bonding to form a one‐dimensional chain of fused rings. There are no significant contacts between planes.     

Photon-induced dissociation with a four-sector tandem mass spectrometer

The feasibility of using photodissociation of protonated peptide molecules to sequence specific fragment ions with a 193-nm pulsed laser beam in a magnetic deflection tandem mass spectrometer of EBEB configuration was demonstrated. Although the short pulse (15 ns) and low repetition rate (100 Hz) of the excimer laser permitted the irradiation of only ～ 0.02% of the (M + H)⁺ ions exiting MS-1, a photon-induced decomposition spectrum of the heptapeptide angiotensio III (M _r 930.5) was produced that was practically the same (but with better signal-to-noise ratio) as that generated by collision-activated dissociation at the same low duty cycle. Because of the low and pulsed fragment ion currents, an array detector was used to record the spectra. A dependence between laser power and abundance of fragment ions was observed (increased power increases the relative abundance of ions of low mass). Laser power was varied from 6 to 80 mJ. Formation of fragment ions from a large peptide (melittin, M, 2844.75) was also observed. The results permit the design of modifications that may increase the fragment ion yield to 10% or higher, which would make photon-induced decomposition a useful method for magnetic deflection mass spectrometers.     

Beiträge zur Untersuchung anorganischer nichtstöchiometrischer Verbindungen. XIV. Oxydationsprodukte von orthorhombischem Nb12O29 Elektronenoptische Untersuchung

Contributions to the Investigation of Inorganic Non-stoichiometric Compounds. XIV. Oxidation Products of Orthorhombic Nb₁₂O₂₉, Electron Optical Investigation An electron optical investigation shows that the orthorhombic starting material Nb₁₂O₂₉(BII) is well ordered. The oxidation products Nb₂O₅(Ox1BII) and Nb₂O₅(Ox2BII) are different from each other in structures as well as in their reactions. Nb₂O₅(Ox1BII) is unstable in the electron beam and differs from BII by characteristic point-defects. The radiation load can lead to the reduction to BII or to a transition into a defect structure with R-type-tunnels. The not well ordered structure of Nb₂O₅(Ox2BII) is stable in the electron beam. Characteristic is the sequence of [2×5] and [3×4] blocks, the latter in two different orientations. The observed composition O/Nb = 2.500 can be described by the present structural modell assuming vacant niobium tetrahedral sites. The large structural differences between the oxidation products of the orthorhombic and the monoclinic Nb₁₂O₂₉ are remarkable.