Fast DNA sequencing up to 1,000 bases by capillary electrophoresis using poly(N,N-dimethylacrylamide) as a separation medium

Poly(N,N-dimethylacrylamide) (PDMA) with a molecular mass of 5.2 x 10(6) g/mol has been synthesized and used in DNA sequencing analysis by capillary electrophoresis (CE). A systematic investigation is presented on the effects of different separation conditions, such as injection amount, capillary inner diameter, polymer concentration, effective separation length, electric field and temperature, on the resolution. DNA sequencing up to 800 bases with a resolution (R) limit of 0.5 (and 1,000 bases with a resolution limit of 0.3) and a migration time of 96 min was achieved by using 2.5% w/v polymer, 150 V/cm separation electric field, and 60 cm effective separation length at room temperature on a DNA sample prepared with FAM-labeled--21M13 forward primer on pGEM3Zf(+) and terminated with ddCTP. Ultrafast and fast DNA sequencing up to 420 and 590 bases (R > or = 0.5) were also achieved by using 3% w/v polymer and 40 cm effective separation length with a separation electric field of 525 and 300 V/cm, and a migration time of 12.5 and 31.5 min, respectively. PDMA has low viscosity, long shelf life and dynamic coating ability to the glass surface. The unique properties of PDMA make it a very good candidate as a separation medium for large-scale DNA sequencing by capillary array electrophoresis (CAE).     

Spectroscopic studies on molecular recognition capabilities of a nucleolipid bearing thymine headgroup to adenosine

The Langmuir-Blodgett (LB) films of octadecanoyl ester of 1-(2-carboxyethyl) thymine deposited from pure water and aqueous adenosine subphases were investigated by ultraviolet-visible (UV-vis), Fourier transform infrared-attenuated total reflection (FTIR-ATR), and Fourier transform surface-enhanced Raman scattering (FT-SERS) spectroscopy. The obtained spectral results indicate that the adenosine molecules in the subphase can be transferred onto solid substrates by LB techniques as a result of the formation of base pairs at the air/water interface. UV-vis spectra alternations indicated that, with increasing adenosine concentration in subphase, more adenosine molecules were recognized by nucleolipid monolayer and were transferred onto the quartz substrates. The closed-packing of the constituent molecules facilitates the photodimerization of the thymine moieties in the headgroup under ultraviolet irradiation. FTIR-ATR results suggest that the hydrocarbon chains of nucleolipid in the LB films deposited from pure water and aqueous adenosine take on a close-packed all trans conformation. By analyzing the FT-SERS spectra results, it can be deduced that the orientation of nucleobase in the headgroup is different before and after the recognition effect occurred. For LB film deposited from pure water, the nucleobases are lying flat on the silver substrates; whereas for LB film deposited from aqueous adenosine, the base pairs take an end-on adsorption on silver substrate.     

Derivation of class II force fields. VIII. Derivation of a general quantum mechanical force field for organic compounds

A class II valence force field covering a broad range of organic molecules has been derived employing ab initio quantum mechanical "observables." The procedure includes selecting representative molecules and molecular structures, and systematically sampling their energy surfaces as described by energies and energy first and second derivatives with respect to molecular deformations. In this article the procedure for fitting the force field parameters to these energies and energy derivatives is briefly reviewed. The application of the methodology to the derivation of a class II quantum mechanical force field (QMFF) for 32 organic functional groups is then described. A training set of 400 molecules spanning the 32 functional groups was used to parameterize the force field. The molecular families comprising the functional groups and, within each family, the torsional angles used to sample different conformers, are described. The number of stationary points (equilibria and transition states) for these molecules is given for each functional group. This set contains 1324 stationary structures, with 718 minimum energy structures and 606 transition states. The quality of the fit to the quantum data is gauged based on the deviations between the ab initio and force field energies and energy derivatives. The accuracy with which the QMFF reproduces the ab initio molecular bond lengths, bond angles, torsional angles, vibrational frequencies, and conformational energies is then given for each functional group. Consistently good accuracy is found for these computed properties for the various types of molecules. This demonstrates that the methodology is broadly applicable for the derivation of force field parameters across widely differing types of molecular structures. Copyright 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1782-1800, 2001     

石墨烯负载高活性Pd催化剂对乙醇的电催化氧化

以石墨粉为原料, 采用Hummers法液相氧化合成了氧化石墨(GO), 然后用化学一步还原制得石墨烯负载钯催化剂. X射线衍射(XRD)、透射电镜(TEM)表征表明, Pd在石墨烯载体上有较好的分散度, 粒径为3-5 nm. 电化学活性面积(EASA)、循环伏安(CV)、计时电流(CA)和计时电位(CP)等电化学测试表明, 与传统Pd/Vulcan XC-72相比, Pd/石墨烯催化剂对碱性介质中乙醇电催化氧化的催化活性有了很大的提高.     

EPR Study on the Complex Formed by Charge‐Transfer Process between Ground‐state Acceptor 2, 3‐Dicyano‐5, 6‐dichloro‐1, 4‐benzoquinone and Some Donors and on Cation Radical of Perylene (or Pyrene)

EPR study showed that the semi‐quinone radical anion of 2,3‐dicyano‐5,6‐dichloro‐1,4‐benzoquinone (DDQ) was formed in a charge transfer process between ground‐state DDQ as acceptor and each one of following ground state donors, i.e., 4‐methyl‐4′‐tridecyl‐2, 2′‐bipyridyl; 4‐methyl‐4′‐nonyl‐2, 2′‐bipyridyl; bis (2,2′‐bipyridyl) (4‐methyl‐4′‐heptadecyl‐2, 2′‐bipyridyl)ruthenium(2+) perchlorate and perylene. EPR study also showed that there are perylene cation radical and pyrene cation radical in the following experimental conditions: (a) in 98% sulfuric add. (b) 10^?3 mol/L perylene (or pyrene) was dissolved in trifluoroacetic acid‐nitrobenzene (1: 1 V/V).     

Microwave Induced Synthesis of 3‐Aryl‐6‐(6‐/8‐substituted 4‐chloroquinoline‐3‐yl) ‐ s ‐triazolo [3,4‐b] −1,3,4‐thiadiazoles

The condensation of 4‐amino‐3‐aryl‐5‐mercapto‐1, 2, 4‐triazoles (1a‐f) with 6‐/8‐substituted 1,4‐dihydro‐4‐oxo‐quinoline‐3‐carboxylic adds (2a‐d) in the presence of phosphorus oxychloride on refluxng or under microwave irradiation gave twenty four novel 3‐aryl‐6‐ (6‐/8‐substituted 4‐chloroquinoline‐3‐yl)‐s‐triazolo[3,4‐b]‐1, 3,4‐thiadiazoles (4a‐x), Considerable increase in the reaction rate has been observed with improved yields under microwave irradiation. The structures of the compounds synthesized were determined by elemental analyses, IR, ¹H NMR and MS spectra. Their spectral properties and the reaction mechanism were also discussed. The preliminary biological test showed that some of compounds bad moderate antibacterial activities.     

Ethylene Oligomerization Catalyzed by MCl2(PPh3)2 Complex‐es/Ethylaluminoxane

The catalytic properties of MCl₂ (PPh₃)₂ (M = Fe, A; Co, B; Ni, C) in combination with ethylaluminoxane (EAO) as cocatalyst for ethylene oligomerization have been investigated. Treatment of the MCl₂ (PPh₃)₂ complexes with EAO in toluene generated active catalysts in situ that are capable of oligomerizating ethylene to low‐carbon olefins. The catalytic activity and product distribution were affected by reaction condition, such as reaction temperature, the ratios of Al/M and the reaction time. The activity of 1.70 × 10⁵ g oligomers/ (mol Co. h) for the catalytic system of CoCl₂(PPh₃)₂ with EAO at 200°C was observed, with the selectivity of 91.1% to C_4–10 olefins and 70.7% to C_4–10 linear α‐olefins.     

Crystal Structure,Magnetic Exchange Interaction,and DFT Study of 2,2′‐(1‐Oxidopyridine‐2,6‐diyl)bis[4,5‐dihydro‐4,4,5,5‐tetramethyl‐3‐oxido‐1H‐imidazol‐1‐oxyl] Hydrate

The structure of a novel oxido‐aminoxyl (=`nitronyl nitroxide') biradical, 2,2′‐(1‐oxidopyridine‐2,6‐diyl)bis[4,5‐dihydro‐4,4,5,5‐tetramethyl‐3‐oxido‐1H‐imidazol‐1‐oxyl] hydrate ( 1 ⋅H₂O) was established by X‐ray analysis in the solid state: monoclinic, space group P2₁/c, Z=4 with a=12.621(4), b=15.704(5), and c=13.001(4) Å, and β=115.202(6)°. Variable‐temperature magnetic susceptibilities show a weak antiferromagnetic interaction between the two oxido‐substituted aminoxyl moieties of 1 , indicative of a singlet ground state. AM1 Calculations located minima for the possible structure based on the X‐ray crystal structure. A hybride density‐functional‐theory calculation with the UB3LYP method from the X‐ray crystal structure establishes the same spin sign in the two aminoxyl moieties and shows that a small spin density is localized at the C‐atoms of the pyridine moiety. These theoretic results are in good agreement with the determined weak antiferromagnetic interaction of 1 .     

BaO-B2O3-GeO2(BaO≤50 mo1％)三元系相图的研究

本文用X射线衍射及差热分析等方法, 研究了BaO-B_2O_3-GeO_2(BaO≤50 mol％)三元系的室温截面相图。发现了一个新的三元化合物Ba_3B_6Ge_2O_(16)(3BaO·3B_2O_3·2GeO_2)。并且研究了BaB_2O_4-Ba_3B_6Ge_2O_(16), BaGeO_3-Ba_3B_6Ge_2O_(16), BaB_2O_4-BaGeO_3三个二元系相图。它们都是共晶体系, 共晶温度分别为937±3 ℃、879±3 ℃875±3 ℃; 共晶组分分别为(BaO)_(0.42)(B_2O_3)_(0.42)(GeO_2)_(0.16), (BaO)_(0.42)(B_2O_3)_(0.24)(GeO_2)_(0.34), (BaO)_(0.50)(B_2O_3)_(0.27)(GeO_2)_(0.23)。这三个二元系组成一个三元共晶体系, 其三元共晶温度为870±3 ℃, 共晶组分为(BaO)_(0.46)(B_2O_3)_(0.27)(GeO_2)_(0.27)。     

On the photoreactivity of diacetylene containing thermoplastic block copolymers

A group of block copolymers containing diacetylenes as chain extenders in their hard segments was prepared, based on urethanes, esters, ureas, and amides as hard segments and polybutadienes, polyethers, polyesters, and polysiloxanes as soft segments. Almost all block copolymers were photoreactive, but there was a wide range of sensitivities. The photoreactivity of the copolymers was found to depend on the reactivity of the monomer unit, on the width of the diacetylene stacks in the hard segments, and on the degree of phase separation in the solid films. To explore the range of monomer reactivities we prepared 15 crystalline monomers. Urethanes were in general the most reactive, and this was attributed in part to the specific effect of hydrogen bonding which brings about a shortening of the C₁ to C₄ distance between diacetylenes tend to reduce the photoreactivity. The behavior of identical diacetylene units in the monomer crystal, in the homopolymer, and in the block copolymer is discussed in this paper.