Electrocatalytic activity of poly(3-methylthiophene) electrodes

Poly 3-methylthiophene (P3MT) modified electrodes have shown an improvement for detecting catecholamines when compared to classical ones. Past work with this polymer electrode suggested the possible presence of “active sites,” which are believed to be the polymer’s center of electrocatalytic activity. The interaction of 1,5-anthroquinone-disolfonic acid (1,5-AQDS) at the P3MT electrode showed a nonreversible behavior resulting in the blocking of “the active sites,” suggesting the specific electcatalytical activity of this polymer is limited to catechol and similar compounds. In order to improve catecholamine detection, two methods of electropolymerization for P3MT were compared under similar conditions; (1) a constant potential for a specific length of time, and (2) potential cycling. It was found that cycling provided a more sensitive CV, i.e. increased number of active sites. Under a controlled pH study (pH range 2–9), the polymer electrode maintained its superior performance, manifested as lower ΔE and higher i, toward catechol over the traditional electrodes. Two different supporting electrolytes were used, sulfate and phosphate, and it was found that in neutral or basic solutions containing phosphate, the oxidation and reduction potentials of catechol shifted to lower values. Solutions containing sulfate exhibited no shift in the oxidation potential at any pH value.     

Synthesis of N-[4-[2-(2,4-Diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)-ethylamino]benzoyl]-L-glutamic acid. An acyclic analogue of 5,6,7,8-tetrahydrofolic acid

The synthesis of N-[4-[2-(2,4-diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)ethylamino]benzoyl]-L-glutamic acid ( 2 ), a two carbon analogue of 5-DACTHF ( 1 ) and an acyclic analogue of 5,6,7,8-tetrahydrofolic acid, is reported. The pyrimidinylacetaldehyde diethyl acetal 3 , which was prepared in 2-steps from 2-chloro acetaldehyde diethyl acetal, was converted to 2 in four steps. Compound 2 was less cytotoxic toward Detroit 98 or L cells than 5-DACTHF ( 1 ).     

Analysis of large screening data sets via adaptively grown phylogenetic-like trees

As the use of high-throughput screening systems becomes more routine in the drug discovery process, there is an increasing need for fast and reliable analysis of the massive amounts of the resulting data. At the forefront of the methods used is data reduction, often assisted by cluster analysis. Activity thresholds reduce the data set under investigation to manageable sizes while clustering enables the detection of natural groups in that reduced subset, thereby revealing families of compounds that exhibit increased activity toward a specific biological target. The above process, designed to handle primarily data sets of sizes much smaller than the ones currently produced by high-throughput screening systems, has become one of the main bottlenecks of the modern drug discovery process. In addition to being fragmented and heavily dependent on human experts, it also ignores all screening information related to compounds with activity less than the threshold chosen and thus, in the best case, can only hope to discover a subset of the knowledge available in the screening data sets. To address the deficiencies of the current screening data analysis process the authors have developed a new method that analyzes thoroughly large screening data sets. In this report we describe in detail this new approach and present its main differences with the methods currently in use. Further, we analyze a well-known, publicly available data set using the proposed method. Our experimental results show that the proposed method can improve significantly both the ease of extraction and amount of knowledge discovered from screening data sets.     

PHOTODESTRUCTION OF TUMOR CELLS BY INDUCTION OF ENDOGENOUS ACCUMULATION OF PROTOPORPHYRIN IX: ENHANCEMENT BY 1, 10-PHENANTHROLINE

Rapidly proliferating transformed mammalian cells can be photodestroyed in vitro upon inducing the accumulation of endogenous protoporphyrin IX (Proto). Proto biosynthesis and accumulation were triggered by manipulation of the porphyrin-heme biosynthetic pathway. Proto accumulation in cultured cells was induced by treatment with 1.0 mM delta-aminolevulinic acid (ALA), a naturally occurring 5-carbon amino acid, for 3.5 h. In darkness, significant Proto accumulation became evident within 3.5 h of incubation. In the light, the accumulated tetrapyrroles triggered destruction of treated cells within the first 30 min of illumination, probably via the rapid oxidation of cellular constituents by singlet oxygen. Protoporphyrin IX accumulation and specific cell lysis increased significantly by inclusion of 0.75 mM 1,10-phenanthroline (Oph), a tetrapyrrole biosynthesis modulator. Slower growing untransformed cells did not accumulate significant amounts of Proto following ALA and Oph treatment unless stimulated to proliferate with the mitogenic lectin Concanavalin A.     

Solvent-dependent vibrational frequencies and reorganization energies of two merocyanine chromophores

Absorption and resonance Raman spectra have been measured over a wide range of solvents for two merocyanine dyes containing the indoline ("Fischer" base) electron donor group with different accepting groups. One appears to be near the cyanine limit (equal contributions of the neutral and zwitterionic resonance forms to both ground- and excited-state structures) based on electrooptic absorption data showing a very small dipole moment change upon electronic excitation. The resonance Raman spectra of both molecules show significant frequency shifts and intensity redistributions that evolve monotonically with increasing solvent polarity and are consistent with increasing zwitterionic character of the ground-state structure. The vibrational reorganization energies of both molecules, obtained by simulating the absorption band shapes, are smaller in polar solvents than in nonpolar or weakly polar ones, consistent with a more cyanine-like structure at higher solvent polarities. However, the vibrational reorganization energies of both molecules exceed 700 cm(-1) in all solvents, larger than in many true cyanine dyes, and the optical absorption maxima do not correlate well with either solvent polarity or vibrational reorganization energy. This indicates some limitations to the structural conclusions that can be reached from the two-state model for pi-conjugated donor-acceptor systems.     

Tunable resonance hyper-Raman spectroscopy of second-order nonlinear optical chromophores

Two-photon-resonant hyper-Raman spectra are reported for three "push-pull" conjugated organic chromophores bearing -NO(2) acceptor groups, two dipolar and one octupolar. The excitation source is an unamplified picosecond mode-locked Ti:sapphire laser tunable from 720 to 950 nm. The linear resonance Raman spectra of the same molecules are measured using excitation from the laser second harmonic. Excitation on resonance with the lowest-lying band in the linear absorption spectrum yields nearly identical resonance Raman and resonance hyper-Raman spectra. However, excitation into a region that appears to contain more than one electronic transition gives rise to different intensity patterns in the linear and nonlinear spectra, indicating that different transitions contribute differently to the one-photon and two-photon oscillator strength. The promise of the hyper-Raman technique for examining electronic transitions that are both one- and two-photon allowed is discussed.     

Synthesis of the penta-glutamyl derivative of N-[4-[N-[3-(2,4-diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)-propyl]amino]benzoyl]-L-glutamic acid (5-DACTHF). An acyclic analogue of tetrahydrofolic acid

The penta-glutamyl derivative of N-[4-[N-[3-(2,4-diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)propyl]amino]-benzoyl)-L-glutamic acid (1, 5-DACTHF, 543U76) was synthesized by a convergent route. L-γ-Glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-glutamic acid heptakis t-butyl ester ( 20 ) was prepared in ten steps from L-glutamic acid di-t-butyl ester and N-(benzyloxycarbonyl)-L-glutamic acid α-t-butyl ester. 4-[N-[3-(2,4-Diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)propyl]trifluoroacetamido]benzoic acid ( 6 ), which was synthesized from pyrimidinylpropionaldehyde 3 in three steps, was condensed with 20 , followed by deprotection to provide N-[4-[N-[3-(2,4-diamino-1,6-dihydro-6-oxo-5-pyrimidinyl)propyl]amino]benzoyl]-L-γ-glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-γ-glutamyl-L-glutamic acid ( 2 ). Hexaglutamate 2 is a potent inhibitor of glycinamide ribonucleotide transformylase.     

Enantioselective synthesis of N(alpha)-Fmoc protected (2S,3R)-3-phenylpipecolic acid. A constrained phenylalanine analogue suitably protected for solid-phase peptide synthesis

Reported herein is the first enantioselective preparation of (2S,3R)-3-phenylpipecolic acid as a conformationally constrained phenylalanine analogue bearing N(alpha)-protection suitable for solid-phase peptide synthesis. Stereochemistries at both the 2- and 3-positions are derived inductively from a single chiral center provided by the commercially available Evans chiral auxiliary, (4S)-4-benzyl-1,3-oxazolidin-2-one. By constraining phi and chi(1) torsion angles, this novel amino acid analogue can serve as a useful tool for the induction of defined geometry in phenylalanine-containing peptides.     

Technical and economic evaluation of different reactors for methanotrophic cultures for propylene oxide production

A two-stage process for the manufacture of propylene oxide is described. The preliminary economics based on use of methanol as a regeneration factor has resulted in a production cost of $12.10/lb of propylene oxide based on propylene oxide production rate of 40 mg/g-cell/h in conventional reactor. Increasing the propylene oxide production from 40 to 500 mg/g-cell/h resulted in a cost reduction from $12.10 to 5.8/lb of propylene oxide. The granular-activated, carbon-fluidized bed reactor (GAC-FBR) absorbs the propylene oxide and when saturated is eluted with ethyl acetate, and the bed is regenerated by steam to drive off the residual solvents. The estimated manufacturing costs are approx 59% lower (from $12.10/lb in conventional reactors to $5.00/lb for GAC-FBRs) for products that are highly inhibitory such as epoxides. In the GAC-FBR reactor, enhancing the propylene oxide production rate from 120 to 1500 mg/g-cell/h has resulted in the cost reduction to $2.00/lb. Enhancing the production capacity from 1 million lb to 10 million lb/yr has further reduced the cost of production to $1.00/lb.     

Resonance hyper-Raman excitation profiles and two-photon states of a donor-acceptor substituted polyene

Resonance Raman and resonance hyper-Raman spectra and excitation profiles have been measured for a "push-pull" donor-acceptor substituted conjugated polyene bearing a julolidine donor group and a nitrophenyl acceptor group, in acetone at excitation wavelengths from 485 to 356 nm (two-photon wavelengths for the nonlinear spectra). These wavelengths span the strong visible to near-UV linear absorption spectrum, which appears to involve at least three different electronic transitions. The relative intensities of different vibrational bands vary considerably across the excitation spectrum, with the hyper-Raman spectra showing greater variation than the linear Raman. A previously derived theory of resonance hyper-Raman intensities is modified to include contributions from purely vibrational levels of the ground electronic state as intermediate states in the two-photon absorption process. These contributions are found to have only a slight effect on the hyper-Rayleigh intensities and profiles, but they significantly influence some of the hyper-Raman profiles. The absorption spectrum and the Raman, hyper-Rayleigh, and hyper-Raman excitation profiles are quantitatively simulated under the assumption that three excited electronic states contribute to the one- and two-photon absorption in this region. The transition centered near 400 nm is largely localized on the nitrophenyl group, while the transitions near 475 and 355 nm are more delocalized.