Tailoring a Dress to Single Protein Molecules: Proteins Can Do It Themselves through Localized Photo-Polymerization and Molecular Imprinting

Molecularly imprinted polymer nanoparticles (MIP NPs) are antibody-like recognition materials prepared by a template-assisted synthesis. MIP NPs able to target biomolecules, like proteins, are under the spotlight for their great potential in medicine, but efficiently imprinting biological templates is still very challenging. Here we propose generating a molecular imprint in single NPs, by photochemically initiating the polymerization from individual protein templates. In this way, each protein molecule tailors itself its own “polymeric dress”. For this, the template protein is covalently coupled with a photoinitiator, Eosin Y. Irradiated with light at 533 nm, the Eosin moiety acts as an antenna and transfers energy to a co-initiator (an amine), which generates a radical and initiates polymerization. As a result, a polymer network is forming only around the very template molecule, producing cross-linked NPs of 50 nm, with single binding sites showing high affinity (K_D 10⁻⁹ m ) for their biological target, and selectivity over other proteins.     

The <Emphasis Type="Italic">k</Emphasis>-domatic number of a graph

Let k be a positive integer, and let G be a simple graph with vertex set V (G). A k-dominating set of the graph G is a subset D of V (G) such that every vertex of V (G)-D is adjacent to at least k vertices in D. A k-domatic partition of G is a partition of V (G) into k-dominating sets. The maximum number of dominating sets in a k-domatic partition of G is called the k-domatic number d _k (G). In this paper, we present upper and lower bounds for the k-domatic number, and we establish Nordhaus-Gaddum-type results. Some of our results extend those for the classical domatic number d(G) = d ₁(G).      

Modeling and Analysis of Modal Switching in Networked Transport Systems

We consider networked transport systems defined on directed graphs: the dynamics on the edges correspond to solutions of transport equations with space dimension one. In addition to the graph setting, a major consideration is the introduction and propagation of discontinuities in the solutions when the system may discontinuously switch modes, naturally or as a hybrid control. This kind of switching has been extensively studied for ordinary differential equations, but not much so far for systems governed by partial differential equations. In particular, we give well-posedness results for switching as a control, both in finite horizon open loop operation and as feedback based on sensor measurements in the system.     

Fe valence state at the surface of the Fe0.5Cu0.5Cr2S4 spinel

Here we present X‐ray absorption measurements of a vacuum cleaved Fe_0.5Cu_0.5Cr₂S₄ single crystal. Measurements at different positions on the cleaved sample surface clearly reveal a difference between the valence state of the Fe ions in the sur‐ face layers and the valency of the Fe ions present in the bulk. These results confirm the findings of recent measurements outlined previously. (© 2010 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Synthesis and properties of an ω,ω′-appended eighteen carbon chains hypericin derivative

Summary An ,-appended eighteen carbon chains hypercin derivative (2) was synthesized starting from emodin. The overall yield of the seven step synthesis was 12%. The¹H and¹³C NMR, absorption, and emission spectroscopic properties were measured;2 can be dissolved even in apolar solvents and polyethylene.

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Synthese und Eigenschaften eines mit C₁₈-Ketten ,-substituierten Hypericinderivats

Zusammenfassung Ein in den Positionen , mit zwei C₁₈-Ketten substituiertes Derivat des Hypericins (2) wurde ausgehend von Emodin synthetisiert. Die Gesamtausbeute der siebenstufigen Synthese betrug 12%. Die¹H- und¹³C-NMR, absorptions- und emissionsspektroskopischen Eigenschaften wurden gemessen;2 kann sogar in apolaren Lösungsmitteln und Polyethylen gelöst werden.

     

Tetrahalidometallate(II) Ionic Liquids with More than One Metal: The Effect of Bromide versus Chloride

Fifteen N-butylpyridinium salts – five monometallic [C₄Py]₂[MBr₄] and ten bimetallic [C₄Py]₂[M_0.5^aM_0.5^bBr₄] (M=Co, Cu, Mn, Ni, Zn) – were synthesized, and their structures and thermal and electrochemical properties were studied. All the compounds are ionic liquids (ILs) with melting points between 64 and 101 °C. Powder and single-crystal X-ray diffraction show that all ILs are isostructural. The electrochemical stability windows of the ILs are between 2 and 3 V. The conductivities at room temperature are between 10⁻⁵ and 10⁻⁶ S cm⁻¹. At elevated temperatures, the conductivities reach up to 10⁻⁴ S cm⁻¹ at 70 °C. The structures and properties of the current bromide-based ILs were also compared with those of previous examples using chloride ligands, which illustrated differences and similarities between the two groups of ILs.     

Coordination and Redox Isomerization in the Reduction of a Uranium(III) Monoarene Complex

Synthetic studies on the redox chemistry of trivalent uranium monoarene complexes were undertaken with a complex derived from the chelating tris(aryloxide)arene ligand (^Ad,MeArO)₃mes^3?. Cyclic voltammetry of [{(^Ad,MeArO)₃mes}U^III] ( 1 ) revealed a nearly reversible and chemically accessible reduction at ?2.495 V vs. Fc/Fc⁺—the first electrochemical evidence for a formally divalent uranium complex. Chemical reduction of 1 indicates that reduction induces coordination and redox isomerization to form a uranium(IV) hydride, and addition of a crown ether results in hydride insertion into the coordinated arene to afford uranium(IV) complexes. This stoichiometric reaction sequence provides structural insight into the mechanism of arene functionalization at diuranium inverted sandwich complexes.     

Aldehyde‐Assisted Ruthenium(II)‐Catalyzed CH Oxygenations

Versatile ruthenium(II) complexes allow for site‐selective C? H oxygenations with weakly‐coordinating aldehydes. The challenging C? H functionalizations proceed with high chemoselectivity by rate‐determining C? H metalation. The new method features an ample substrate scope, which sets the stage for the step‐economical preparation of various bioactive heterocycles.     

Development of an on-line automated sample clean-up method and liquid chromatography–tandem mass spectrometry analysis: application in an in vitro proteolytic assay

Fluorescence detection has been a method of choice in industry for screening assays, including identification of enzyme inhibitors, owing to its high-throughput capabilities, excellent reproducibility, and sensitivity. Occasionally, inhibitors are identified that challenge the fluorescence assay limit, necessitating the development of more sensitive detection methods to assess these compounds. For data mining purposes, however, original assay conditions may be required. A direct method transfer to highly sensitive and specific LC-MS-based methods has not always been possible due to the presence of MS-incompatible neutral detergents and non-volatile salts in the assay matrix. Utilizing an in vitro proteolytic screening assay for the serine protease hepatitis C virus (HCV) nonstructural (NS) 3 protease as a test case, we report the development of an automated sample clean-up procedure implemented on-line with liquid chromatography–tandem mass spectrometry (LC-MS/MS) analysis to complement fluorescence detection. Ion exchange and peptide microtraps were employed to remove MS-incompatible assay matrix components. Three protease inhibitors were used to validate the MS/MS method. Comparable potencies were achieved for these compounds when assessed by fluorescence and MS/MS detection. Furthermore, four-fold less enzyme could be utilized when employing the MS/MS method compared to fluorescence detection. The longer analysis time, however, resulted in reduced sample capacity. The potency of our designed HCV NS3 protease inhibitors are thus routinely evaluated using a continuous fluorescence-based assay. Only pertinent inhibitors approaching the fluorescence assay sensitivity limit are subsequently analyzed further by LC-MS/MS. This methodology allows us to maintain a database and to compare results independent of the detection method. Despite the relatively slow sample turnaround time of this LC-MS approach, the versatility of the automated on-line clean-up procedure and sample analysis can be applied to assays containing reagents which were historically considered to be MS incompatible.     

Molybdenum and tungsten structural differences are dependent on ndz(2)/(n + 1)s mixing: comparisons of (silox)3MX/R (M = Mo, W; silox = (t)Bu3SiO)

Treatment of trans-(Et 2O) 2MoCl 4 with 2 or 3 equiv of Na(silox) (i.e., NaOSi (t) Bu 3) afforded (silox) 3MoCl 2 ( 1-Mo) or (silox) 3MoCl ( 2-Mo). Purification of 2-Mo was accomplished via addition of PMe 3 to precipitate (silox) 3ClMoPMe 3 ( 2-MoPMe 3), followed by thermolysis to remove phosphine. Use of MoCl 3(THF) 3 with various amounts of Na(silox) produced (silox) 2ClMoMoCl(silox) 2 ( 3-Mo). Alkylation of 2-Mo with MeMgBr or EtMgBr afforded (silox) 3MoR (R = Me, 2-MoMe; Et, 2-MoEt). 2-MoEt was also synthesized from C 2H 4 and (silox) 3MoH, which was prepared from 2-Mo and NaBEt 3H. Thermolysis of WCl 6 with HOSi ( t )Bu 3 afforded (silox) 2WCl 4 ( 4-W), and sequential treatment of 4-W with Na/Hg and Na(silox) provided (silox) 3WCl 2 ( 1-W, tbp, X-ray), which was alternatively prepared from trans-(Et 2S) 2WCl 4 and 3 equiv of Tl(silox). Na/Hg reduction of 1-W generated (silox) 3WCl ( 2-W). Alkylation of 2-W with MeMgBr produced (silox) 3WMe ( 2-WMe), which dehydrogenated to (silox) 3WCH ( 6-W) with Delta H (double dagger) = 14.9(9) kcal/mol and Delta S (double dagger) = -26(2) eu. Magnetism and structural studies revealed that 2-Mo and 2-MoEt have triplet ground states (GS) and distorted trigonal monopyramid (tmp) and tmp structures, respectively. In contrast, 2-W and 2-WMe possess squashed-T d (distorted square planar) structures, and the former has a singlet GS. Quantum mechanics/molecular mechanics studies of the S = 0 and S = 1 states for full models of 2-Mo, 2-MoEt, 2-W, and 2-WMe corroborate the experimental findings and are consistent with the greater nd z (2) /( n + 1)s mixing in the third-row transition-metal species being the dominant feature in determining the structural disparity between molybdenum and tungsten.