Beta-sheet preferences from first principles

The natural amino acids have different preferences of occurring in specific types of secondary protein structure. Simulations are performed on periodic model beta-sheets of 14 different amino acids, at the level of density functional theory, employing the generalized gradient approximation. We find that the statistically observed beta-sheet propensities correlate very well with the calculated binding energies. Analysis of the calculations shows that the beta-sheet propensities are determined by the local flexibility of the individual polypeptide strands.     

Solution and X-Ray Crystal Structures of the Di- and Tetra-allyl Ether of tert- utylcalix[4]arene

The di- and tetra-allyl ethers of tert-butylcalix[4]arene 1 and 2 have been prepared by alkylation of tert-butylcalix[4]arene with allyl bromide and K₂CO₃ using different reaction times. Solution ¹H NMR measurement of the di-allyl ether 1 and X-ray crystal structures of the complexes of 1 with chloroform (1a) or methanol (1b) indicate the cone conformation of 1 in which intramolecular hydrogen bonding can be maximized. The crystalline state conformers 1a and 1b are distorted in different grades depending on the solvent. While methanol is incorporated in the macrocycle, chloroform molecules do not occupy the cage. The solution ¹H NMR spectra of tetra-allyl ether 2 show the co-existence of the cone and partial cone conformation. The partial cone conformer of 2 was investigated by X-ray crystallography. In this compound hydrogen bonding is not existent. The conformer distribution is likely affected by steric and template effects.     

Determination of organophosphorus, triazine and 2,6-dinitroaniline pesticides in aqueous samples via solid-phase microextraction (SPME) and gas chromatography with nitrogen-phosphorus detection

Solid-phase microextraction (SPME) represents a very simple and rapid method for the extraction of organophosphorus, triazine and 2,6-dinitroaniline pesticides from aqueous samples without making use of any solvents. The same fiber can be used repeatedly. Moreover, a sample volume as small as 3 mL can be employed with no loss in sensitivity. 34 compounds have been extracted from aqueous samples by SPME using a 85 m polyacrylate fiber. For organophosphorus pesticides, a 100 m polydimethylsiloxane fiber has been used additionally for comparison. The fibers were directly introduced into the heated split/splitless injector of the gas chromatograph and determined using a nitrogen-phosphorus detector. The method was evaluated with respect to the limit of detection (LOD), linearity and precision. The limit of detection (LOD) depends on the compound and varies from 0.005–0.09 g/L. The method is linear over at least three orders of magnitude with coefficients of correlation usually >0.999. For triazines and 2,6-dinitroanilines the coefficient of variation (precision) is <8% while for organophosphorus compounds it may reach values up to 18% (however, if the latter compounds are extracted using the polydimethylsiloxane phase considerably higher precision is achieved). The partitioning of the analyte between the aqueous phase and the polymeric phase depends on the hydrophobicity of the compound as expressed by the octanol/water partitioning coefficient (P_ow). For triazines it was shown that there is a linear dependence of the logarithm of the analyte response on the log(P_ow) i.e. the higher the hydrophobicity, the higher the affinity of the analytes to the polymeric phase of the fiber and the higher the response. Salt addition has a strong effect on the extraction efficiency. This effect increases with decreasing hydrophobicity (increasing polarity) of the compound. The triazines ametryn, atrazine, propazine, simazine and simetryn have been identified in a ground water well sample by SPMEGC/NPD.     

Radical 4-exo cyclizations via template catalysis

The mechanism of catalytic 4-exo cyclizations without gem-dialkyl substitution was investigated by a comparison of cyclic voltammetry, EPR, and computational studies with previously published synthetic results. The most active catalyst is a super-unsaturated 13-electron titanocene(III) complex that is formed by supramolecular activation through hydrogen bonding. The template catalyst binds radicals via a two-point binding that is mandatory for the success of the 4-exo cyclization. The computational investigations revealed that formation of the observed trans-cyclobutane product is not possible from the most stable substrate radical. Instead, the most stable product is formed with the lowest energy of activation from a disfavored substrate in a Curtin-Hammett related scenario.     

Reversible gas-phase redox processes catalyzed by Co-exchanged MFU-4l(arge)

Postsynthetic metal ion exchange in a benzotriazolate-based MFU-4l(arge) framework leads to a Co(II)-containing framework with open metal sites showing reversible gas-phase oxidation properties.     

Applying Unconventional Spectroscopies to the Single-Molecule Magnets,Co(PPh3)2X2 (X=Cl,Br, I): Unveiling Magnetic Transitions and Spin-Phonon Coupling

Large separation of magnetic levels and slow relaxation in metal complexes are desirable properties of single-molecule magnets (SMMs). Spin-phonon coupling (interactions of magnetic levels with phonons) is ubiquitous, leading to magnetic relaxation and loss of memory in SMMs and quantum coherence in qubits. Direct observation of magnetic transitions and spin-phonon coupling in molecules is challenging. We have found that far-IR magnetic spectra (FIRMS) of Co(PPh₃)₂X₂ ( Co-X ; X=Cl, Br, I) reveal rarely observed spin-phonon coupling as avoided crossings between magnetic and u-symmetry phonon transitions. Inelastic neutron scattering (INS) gives phonon spectra. Calculations using VASP and phonopy programs gave phonon symmetries and movies. Magnetic transitions among zero-field split (ZFS) levels of the S=3/2 electronic ground state were probed by INS, high-frequency and -field EPR (HFEPR), FIRMS, and frequency-domain FT terahertz EPR (FD-FT THz-EPR), giving magnetic excitation spectra and determining ZFS parameters (D, E) and g values. Ligand-field theory (LFT) was used to analyze earlier electronic absorption spectra and give calculated ZFS parameters matching those from the experiments. DFT calculations also gave spin densities in Co-X , showing that the larger Co(II) spin density in a molecule, the larger its ZFS magnitude. The current work reveals dynamics of magnetic and phonon excitations in SMMs. Studies of such couplings in the future would help to understand how spin-phonon coupling may lead to magnetic relaxation and develop guidance to control such coupling.     

Di-tert-butyldiphosphatetrahedrane as a Source of 1,2-Diphosphacyclobutadiene Ligands

Reactions of di-tert-butyldiphosphatetrahedrane ( 1 ) with cycloocta-1,5-diene- or anthracene-stabilised metalate anions of iron and cobalt consistently afford complexes of the rarely encountered 1,2-diphosphacyclobutadiene ligand, which have previously been very challenging synthetic targets. The subsequent reactivity of 1,2-diphosphacyclobutadiene cobaltates toward various electrophiles has also been investigated and is compared to reactions of related 1,3-diphosphacyclobutadiene complexes. The results highlight the distinct reactivity of such isomeric species, showing that the 1,2-isomers can act as precursors for previously unknown triphospholium ligands. The electronic structures of the new complexes were investigated by several methods, including NMR, EPR and Mößbauer spectroscopies as well as quantum chemical calculations.     

Macrocyclic polymerization - a new approach to molecular engineering

2,2-Dibutyl-2-stanna-1,3-dioxacycloalkanes were used as cyclic initiators for the ring-opening polymerization of various lactons. This method exclusively yielded series of macrocyclic polylactones without any competition with linear polymers. Under optimized reaction conditions these macrocyclic polymerizations obey the pattern of “living polymerizations”. The living chain ends allow the syntheses of macrocyclic blockcopolymers. The macrocyclic polylactones react with carboxylic acid chlorides by ring-opening yielding telechelic oligo or polylactones. Furthermore, the tin containing macrocyclic polylactones can be used as difunctional “monomers” for polycondensations with dicarboxylic acid dichlorides.