Towards Discrimination of Plant Species by Machine Vision: Advanced Statistical Analysis of Chlorophyll Fluorescence Transients

Automatic discrimination of plant species is required for precision farming and for advanced environmental protection. For this task, reflected sunlight has already been tested whereas fluorescence emission has been only scarcely considered. Here, we investigated the discriminative potential of chlorophyll fluorescence imaging in a case study using three closely related plant species of the family Lamiaceae. We compared discriminative potential of eight classifiers and four feature selection methods to identify the fluorescence parameters that can yield the highest contrast between the species. Three plant species: Ocimum basilicum, Origanum majorana and Origanum vulgare were grown separately as well as in pots where all three species were mixed. First, eight statistical classifiers were applied and tested in simulated species discrimination. The performance of the Quadratic Discriminant Classifier was found to be the most efficient. This classifier was further applied in combination with four different methods of feature selection. The Sequential Forward Floating Selection was found as the most efficient method for selecting the best performing subset of fluorescence images. The ability of the combinatorial statistical techniques for discriminating the species was also compared to the resolving power of conventional fluorescence parameters and found to be more efficient.     

Approximation algorithms for scheduling unrelated parallel machines

We consider the following scheduling problem. There arem parallel machines andn independent jobs. Each job is to be assigned to one of the machines. The processing of jobj on machinei requires timep _ij . The objective is to find a schedule that minimizes the makespan.Our main result is a polynomial algorithm which constructs a schedule that is guaranteed to be no longer than twice the optimum. We also present a polynomial approximation scheme for the case that the number of machines is fixed. Both approximation results are corollaries of a theorem about the relationship of a class of integer programming problems and their linear programming relaxations. In particular, we give a polynomial method to round the fractional extreme points of the linear program to integral points that nearly satisfy the constraints.In contrast to our main result, we prove that no polynomial algorithm can achieve a worst-case ratio less than 3/2 unlessP = NP. We finally obtain a complexity classification for all special cases with a fixed number of processing times.A preliminary version of this paper appeared in theProceedings of the 28th Annual IEEE Symposium on the Foundations of Computer Science (Computer Society Press of the IEEE, Washington, D.C., 1987) pp. 217–224.     

UV laser deposition of nanostructured Si/C/O/N/H from disilazane precursors and evolution to silicon oxycarbonitride

Megawatt ArF laser photolysis of gaseous methyldisilazanes [(CH₃)_nH_3?nSi]₂NH (n = 2, 3) in excess of Ar yields hydrocarbons (major volatile products), methylsilanes (minor volatile products) and allows chemical vapour deposition of solid amorphous Si/C/O/N/H powder containing Si? X (X? C, H, O, N) bonds. The incorporation of O is due to a high reactivity of the primarily formed products towards air moisture. The resulting solid materials possess nanometer‐sized texture and high specific area, contain Si‐centered radicals and anneal under argon to silicon oxycarbonitride, whose structure is described as a network of O‐ and N‐interconnected Si and C atoms. Copyright © 2006 John Wiley & Sons, Ltd.     

Linearly polarized, 3.35 W narrow-linewidth, 1150 nm fiber master oscillator power amplifier for frequency doubling to the yellow

A high-power linearly polarized Yb-doped silica fiber master oscillator power amplifier at 1150 nm is reported. It produced 3.35 W cw and 2.33 W of average power in 1 micros pulses at a 100 kHz repetition rate, both with 8 pm linewidth. This is the first report, to the best of our knowledge, of a high-power Yb-doped fiber amplifier at a wavelength longer than 1135 nm. The pulsed output was frequency doubled in a bulk periodically poled near-stoichiometric LiTaO(3) chip to generate 976 mW of average power at 575 nm with an overall system optical-to-optical efficiency of 9.8% with respect to launched pump power.     

A novel technique for time-resolved detection and tracking of interfacial and matrix fracture in layered materials

A novel experimental technique is developed for time-resolved detection and tracking of damage in the forms of delamination and matrix cracking in layered materials such as composite laminates. The technique is non-contact in nature and uses dual or quadruple laser interferometers for high temporal resolution. Simultaneous measurements of differential displacement and velocity at individual locations are obtained to analyze the initiation and progression of interfacial fracture and/or matrix cracking/delamination in a polymer matrix composite laminate system reinforced by graphite fibers. The measurements at multiple locations allow the speeds at which interfacial crack front (mode-I) or matrix cracking/delamination front (mode-II dominated) propagates to be determined. Experiments carried out use three-point bend configurations. Impact loading is achieved using a modified Kolsky bar apparatus with a complete set of diagnostics for load, deformation, deformation rate, and input energy measurement. This technique is used to characterize the full process of damage initiation and growth. The experiments also focused on the quantification of the speed at which delamination or damage propagates under primarily mode-I and mode-II conditions. The results show that the speed of delamination (mode-I) or the speed of matrix cracking/delamination (primarily mode-II) increases linearly with impact velocity. Furthermore, speeds of matrix failure/delamination under primarily mode-II conditions are much higher than the speeds of mode-I crack induced delamination under mode-I conditions.     

Creating Space for Large Acceptors: Rational Biocatalyst Design for Resveratrol Glycosylation in an Aqueous System

Polyphenols display a number of interesting properties but their low solubility limits practical applications. In that respect, glycosylation offers a solution for which sucrose phosphorylase has been proposed as a cost‐effective biocatalyst. However, its activity on alternative acceptor substrates is too low for synthetic purposes and typically requires the addition of organic (co‐)solvents. Here, we describe the engineering of the enzyme from Thermoanaerobacterium thermosaccharolyticum to enable glycosylation of resveratrol as test case. Based on docking and modeling studies, an active‐site loop was predicted to hinder binding. Indeed, the unbolted loop variant R134A showed useful affinity for resveratrol (K_m=185 mM ) and could be used for the quantitative production of resveratrol 3‐α‐glucoside in an aqueous system. Improved activity was also shown for other acceptors, introducing variant R134A as promising new biocatalyst for glycosylation reactions on bulky phenolic acceptors.     

High Performance Liquid Chromatography/Electrochemistry/High Resolution Electrospray Ionization‐Mass Spectrometry (HPLC/EC/HR ESI‐MS) Characterization of Selected Cytokinins Oxidation Products

Electrochemistry combined with mass spectrometry represents an emerging analytical technique used to study the oxidation pathway of various drugs and in vivo occurring compounds, continuously showing a capability to generate many known metabolites or new oxidation products. An on‐line HPLC/EC/HR ESI‐MS method had been used to investigate the oxidation of selected cytokinin compounds. This setup allowed rapid identification and general structure elucidation of the obtained products. An electrochemical oxidation of isopentenyladenine resulted in five products, including hydroxylated and dehydrogenated products, which correlates very well with its in vivo metabolism. Electrochemical conversion of trans‐zeatin revealed six products, with two dehydrogenation products corresponding to its in vivo occurring metabolites. cis‐Zeatin oxidation in the electrochemical cell gave rise to eight products, resembling similarity to trans‐zeatin oxidation. All three compounds underwent a complete turnover mainly through two oxidation reactions occurring in the electrochemical cell? dehydrogenation and a less typical aliphatic hydroxylation. The resulting products are in correlation with their known in vivo metabolism.     

High‐throughput workflow for identification of phosphorylated peptides by LC‐MALDI‐TOF/TOF‐MS coupled to in situ enrichment on MALDI plates functionalized by ion landing

We report an MS‐based workflow for identification of phosphorylated peptides from trypsinized protein mixtures and cell lysates that is suitable for high‐throughput sample analysis. The workflow is based on an in situ enrichment on matrix‐assisted laser desorption/ionization (MALDI) plates that were functionalized by TiO₂ using automated ion landing apparatus that can operate unsupervised. The MALDI plate can be functionalized by TiO₂ into any array of predefined geometry (here, 96 positions for samples and 24 for mass calibration standards) made compatible with a standard MALDI spotter and coupled with high‐performance liquid chromatography. The in situ MALDI plate enrichment was compared with a standard precolumn‐based separation and achieved comparable or better results than the standard method. The performance of this new workflow was demonstrated on a model mixture of proteins as well as on Jurkat cells lysates. The method showed improved signal‐to‐noise ratio in a single MS spectrum, which resulted in better identification by MS/MS and a subsequent database search. Using the workflow, we also found specific phosphorylations in Jurkat cells that were nonspecifically activated by phorbol 12‐myristate 13‐acetate. These phosphorylations concerned the mitogen‐activated protein kinase/extracellular signal‐regulated kinase signaling pathway and its targets and were in agreement with the current knowledge of this signaling cascade. Control sample of non‐activated cells was devoid of these phosphorylations. Overall, the presented analytical workflow is able to detect dynamic phosphorylation events in minimally processed mammalian cells while using only a short high‐performance liquid chromatography gradient. Copyright © 2015 John Wiley & Sons, Ltd.     

Arrival time distributions of product ions reveal isomeric ratio of deprotonated molecules in ion mobility–mass spectrometry of hyaluronan‐derived oligosaccharides

Hyaluronic acid is a naturally occurring linear polysaccharide with substantial medical potential. In this work, discrimination of tyramine‐based hyaluronan derivatives was accessed by ion mobility–mass spectrometry of deprotonated molecules and nuclear magnetic resonance spectroscopy. As the product ion mass spectra did not allow for direct isomer discrimination in mixture, the reductive labeling of oligosaccharides as well as stable isotope labeling was performed. The ion mobility separation of parent ions together with the characteristic fragmentation for reduced isomers providing unique product ions allowed us to identify isomers present in a mixture and determine their mutual isomeric ratio. The determination used simple recalculation of arrival time distribution areas of unique ions to areas of deprotonated molecules. Mass spectrometry data were confirmed by nuclear magnetic resonance spectroscopy. Copyright © 2015 John Wiley & Sons, Ltd.